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Versions: 11
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Contents
require 'ms/cv/paramable'
module MS
class Mzml
class Run
include MS::CV::Paramable
# required
attr_accessor :default_instrument_configuration
# optional
attr_accessor :default_source_file
# required
attr_accessor :id
# optional
attr_accessor :sample
# optional
attr_accessor :start_time_stamp
# a SpectrumList object (a special array of spectra)
attr_accessor :spectrum_list
# takes a ChromatogramList object (a special array of chromatograms)
attr_accessor :chromatogram_list
# yields self if given a block
def initialize(id, default_instrument_configuration, opts={params: []}, &block)
@id = id
@default_instrument_configuration = default_instrument_configuration
describe!(*opts[:params])
block.call(self) if block
end
def to_xml(builder)
atts = { id: @id,
defaultInstrumentConfigurationRef: @default_instrument_configuration.id
}
atts[:defaultSourceFileRef] = @default_source_file.id if @default_source_file
atts[:sampleRef] = @sample.id if @sample
atts[:startTimeStamp] = @start_time_stamp if @start_time_stamp
builder.run(atts) do |run_n|
super(run_n)
spectrum_list.to_xml(run_n) if spectrum_list
chromatogram_list.to_xml(run_n) if chromatogram_list
end
builder
end
end
end
end
Version data entries
11 entries across 11 versions & 1 rubygems