Sha256: 93990b880ae085512c1c620f076f65616904566f40781d85041cf5ad9c65a7e5

Contents?: true

Size: 1.84 KB

Versions: 21

Compression:

Stored size: 1.84 KB

Contents

#!/usr/bin/env cwl-runner

cwlVersion: v1.0
class: CommandLineTool
baseCommand:
arguments: ["output.dir=$(runtime.outdir)"]
hints:
  DockerRequirement:
    dockerPull: ibisba/retropath2:latest
inputs:
  input.rulesfile:
    type: File
    inputBinding:
      prefix: input.rulesfile=
      separate: false
  input.sourcefile:
    type: File
    inputBinding:
      prefix: input.sourcefile=
      separate: false
  input.sinkfile:
    type: File?
    inputBinding:
      prefix: input.sinkfile=
      separate: false
  input.cofsfile:
    type: File?
    inputBinding:
      prefix: input.cofsfile=
      separate: false

  input.topx:
    type: int?
    inputBinding:
      prefix: input.topx=
      separate: false
  input.max-steps:
    type: int?
    inputBinding:
      prefix: input.max-steps=
      separate: false
  input.dmin:
    type: int?
    inputBinding:
      prefix: input.dmin=
      separate: false
  input.dmax:
    type: int?
    inputBinding:
      prefix: input.dmax=
      separate: false
  input.mwmax-source:
    type: int?
    inputBinding:
      prefix: input.mwmax-source=
      separate: false
  input.mwmax-cof:
    type: int?
    inputBinding:
      prefix: input.mwmax-cof=
      separate: false
  input.stereo_mode:
    type: string?
    inputBinding:
      prefix: input.stereo_mode=
      separate: false
  input.std_mode:
    type: string?
    inputBinding:
      prefix: input.std_mode=
      separate: false
#dev.prefilter-rm-brakets int
#dev.use-py-fire int
#dev.py-fire-timeout int
#dev.source-chunk-size int
#dev.py-fire-procs int
#dev.scope-filter-bootstraps int
#dev.scope-filter-stepback int
#dev.scope-filter-samestep int

outputs:
  solutionfile:
    type: File
    outputBinding:
      glob: results.csv
  sourceinsinkfile:
    type: File?
    outputBinding:
      glob: source-in-sink.csv
  stdout:
    type: stdout

stdout: output.txt

Version data entries

21 entries across 21 versions & 1 rubygems

Version Path
ro-crate-0.5.2 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.5.1 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.5.0 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.17 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.16 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.15 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.14 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.13 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.12 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.11 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.10 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.9 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.8 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.7 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.6 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.5 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.4 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.3 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.2 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl
ro-crate-0.4.1 test/fixtures/workflow-0.2.0/tools/RetroPath2.cwl