# frozen_string_literal: true require 'csv' require 'rumale/validation' require 'rumale/utils' require 'rumale/preprocessing/min_max_scaler' module Rumale # Module for loading and saving a dataset file. module Dataset class << self # Load a dataset with the libsvm file format into Numo::NArray. # # @param filename [String] A path to a dataset file. # @param zero_based [Boolean] Whether the column index starts from 0 (true) or 1 (false). # @param dtype [Numo::NArray] Data type of Numo::NArray for features to be loaded. # # @return [Array] # Returns array containing the (n_samples x n_features) matrix for feature vectors # and (n_samples) vector for labels or target values. def load_libsvm_file(filename, zero_based: false, dtype: Numo::DFloat) ftvecs = [] labels = [] n_features = 0 CSV.foreach(filename, col_sep: "\s", headers: false) do |line| label, ftvec, max_idx = parse_libsvm_line(line, zero_based) labels.push(label) ftvecs.push(ftvec) n_features = max_idx if n_features < max_idx end [convert_to_matrix(ftvecs, n_features, dtype), Numo::NArray.asarray(labels)] end # Dump the dataset with the libsvm file format. # # @param data [Numo::NArray] (shape: [n_samples, n_features]) matrix consisting of feature vectors. # @param labels [Numo::NArray] (shape: [n_samples]) matrix consisting of labels or target values. # @param filename [String] A path to the output libsvm file. # @param zero_based [Boolean] Whether the column index starts from 0 (true) or 1 (false). def dump_libsvm_file(data, labels, filename, zero_based: false) n_samples = [data.shape[0], labels.shape[0]].min single_label = labels.shape[1].nil? label_type = detect_dtype(labels) value_type = detect_dtype(data) File.open(filename, 'w') do |file| n_samples.times do |n| label = single_label ? labels[n] : labels[n, true].to_a file.puts(dump_libsvm_line(label, data[n, true], label_type, value_type, zero_based)) end end end # Generate a two-dimensional data set consisting of an inner circle and an outer circle. # # @param n_samples [Integer] The number of samples. # @param shuffle [Boolean] The flag indicating whether to shuffle the dataset # @param noise [Float] The standard deviaion of gaussian noise added to the data. # If nil is given, no noise is added. # @param factor [Float] The scale factor between inner and outer circles. The interval of factor is (0, 1). # @param random_seed [Integer] The seed value using to initialize the random generator. def make_circles(n_samples, shuffle: true, noise: nil, factor: 0.8, random_seed: nil) Rumale::Validation.check_params_numeric(n_samples: n_samples, factor: factor) Rumale::Validation.check_params_boolean(shuffle: shuffle) Rumale::Validation.check_params_numeric_or_nil(noise: noise, random_seed: random_seed) raise ArgumentError, 'The number of samples must be more than 2.' if n_samples <= 1 raise RangeError, 'The interval of factor is (0, 1).' if factor <= 0 || factor >= 1 # initialize some variables. rs = random_seed rs ||= srand rng = Random.new(rs) n_samples_out = n_samples.fdiv(2).to_i n_samples_in = n_samples - n_samples_out # make two circles. linsp_out = Numo::DFloat.linspace(0, 2 * Math::PI, n_samples_out) linsp_in = Numo::DFloat.linspace(0, 2 * Math::PI, n_samples_in) circle_out = Numo::DFloat[Numo::NMath.cos(linsp_out), Numo::NMath.sin(linsp_out)].transpose circle_in = Numo::DFloat[Numo::NMath.cos(linsp_in), Numo::NMath.sin(linsp_in)].transpose x = Numo::DFloat.vstack([circle_out, factor * circle_in]) y = Numo::Int32.hstack([Numo::Int32.zeros(n_samples_out), Numo::Int32.ones(n_samples_in)]) # shuffle data indices. if shuffle rand_ids = Array(0...n_samples).shuffle(random: rng.dup) x = x[rand_ids, true].dup y = y[rand_ids].dup end # add gaussian noise. x += Rumale::Utils.rand_normal(x.shape, rng.dup, 0.0, noise) unless noise.nil? [x, y] end # Generate a two-dimensional data set consisting of two half circles shifted. # # @param n_samples [Integer] The number of samples. # @param shuffle [Boolean] The flag indicating whether to shuffle the dataset # @param noise [Float] The standard deviaion of gaussian noise added to the data. # If nil is given, no noise is added. # @param random_seed [Integer] The seed value using to initialize the random generator. def make_moons(n_samples, shuffle: true, noise: nil, random_seed: nil) Rumale::Validation.check_params_numeric(n_samples: n_samples) Rumale::Validation.check_params_boolean(shuffle: shuffle) Rumale::Validation.check_params_numeric_or_nil(noise: noise, random_seed: random_seed) raise ArgumentError, 'The number of samples must be more than 2.' if n_samples <= 1 # initialize some variables. rs = random_seed rs ||= srand rng = Random.new(rs) n_samples_out = n_samples.fdiv(2).to_i n_samples_in = n_samples - n_samples_out # make two half circles. linsp_out = Numo::DFloat.linspace(0, Math::PI, n_samples_out) linsp_in = Numo::DFloat.linspace(0, Math::PI, n_samples_in) circle_out = Numo::DFloat[Numo::NMath.cos(linsp_out), Numo::NMath.sin(linsp_out)].transpose circle_in = Numo::DFloat[1 - Numo::NMath.cos(linsp_in), 1 - Numo::NMath.sin(linsp_in) - 0.5].transpose x = Numo::DFloat.vstack([circle_out, circle_in]) y = Numo::Int32.hstack([Numo::Int32.zeros(n_samples_out), Numo::Int32.ones(n_samples_in)]) # shuffle data indices. if shuffle rand_ids = Array(0...n_samples).shuffle(random: rng.dup) x = x[rand_ids, true].dup y = y[rand_ids].dup end # add gaussian noise. x += Rumale::Utils.rand_normal(x.shape, rng.dup, 0.0, noise) unless noise.nil? [x, y] end # Generate Gaussian blobs. # # @param n_samples [Integer] The total number of samples. # @param n_features [Integer] The number of features. # If "centers" parameter is given as a Numo::DFloat array, this parameter is ignored. # @param centers [Integer/Numo::DFloat/Nil] The number of cluster centroids or the fixed cluster centroids. # If nil is given, the number of cluster centroids is set to 3. # @param cluster_std [Float] The standard deviation of the clusters. # @param center_box [Array] The bounding box for each cluster centroids. # If "centers" parameter is given as a Numo::DFloat array, this parameter is ignored. # @param shuffle [Boolean] The flag indicating whether to shuffle the dataset # @param random_seed [Integer] The seed value using to initialize the random generator. def make_blobs(n_samples = 1000, n_features = 2, centers: nil, cluster_std: 1.0, center_box: [-10, 10], shuffle: true, random_seed: nil) Rumale::Validation.check_params_numeric(n_samples: n_samples, n_features: n_features, cluster_std: cluster_std) Rumale::Validation.check_params_type(Array, center_box: center_box) Rumale::Validation.check_params_boolean(shuffle: shuffle) Rumale::Validation.check_params_numeric_or_nil(random_seed: random_seed) # initialize rng. rs = random_seed rs ||= srand rng = Random.new(rs) # initialize centers. if centers.is_a?(Numo::DFloat) n_centers = centers.shape[0] n_features = centers.shape[1] else n_centers = centers.is_a?(Integer) ? centers : 3 center_min = center_box.first center_max = center_box.last centers = Rumale::Utils.rand_uniform([n_centers, n_features], rng) normalizer = Rumale::Preprocessing::MinMaxScaler.new(feature_range: [center_min, center_max]) centers = normalizer.fit_transform(centers) end # generate blobs. sz_cluster = [n_samples / n_centers] * n_centers (n_samples % n_centers).times { |n| sz_cluster[n] += 1 } x = Rumale::Utils.rand_normal([sz_cluster[0], n_features], rng, 0.0, cluster_std) + centers[0, true] y = Numo::Int32.zeros(sz_cluster[0]) (1...n_centers).each do |n| c = Rumale::Utils.rand_normal([sz_cluster[n], n_features], rng, 0.0, cluster_std) + centers[n, true] x = Numo::DFloat.vstack([x, c]) y = y.concatenate(Numo::Int32.zeros(sz_cluster[n]) + n) end # shuffle data. if shuffle rand_ids = Array(0...n_samples).shuffle(random: rng.dup) x = x[rand_ids, true].dup y = y[rand_ids].dup end [x, y] end private def parse_libsvm_line(line, zero_based) label = parse_label(line.shift) adj_idx = zero_based == false ? 1 : 0 max_idx = -1 ftvec = [] while (el = line.shift) idx, val = el.split(':') idx = idx.to_i - adj_idx val = val.to_i.to_s == val ? val.to_i : val.to_f max_idx = idx if max_idx < idx ftvec.push([idx, val]) end [label, ftvec, max_idx] end def parse_label(label) lbl_arr = label.split(',').map { |lbl| lbl.to_i.to_s == lbl ? lbl.to_i : lbl.to_f } lbl_arr.size > 1 ? lbl_arr : lbl_arr[0] end def convert_to_matrix(data, n_features, dtype) mat = [] data.each do |ft| vec = Array.new(n_features) { 0 } ft.each { |el| vec[el[0]] = el[1] } mat.push(vec) end dtype.asarray(mat) end def detect_dtype(data) arr_type_str = Numo::NArray.array_type(data).to_s type = '%s' type = '%d' if ['Numo::Int8', 'Numo::Int16', 'Numo::Int32', 'Numo::Int64'].include?(arr_type_str) type = '%d' if ['Numo::UInt8', 'Numo::UInt16', 'Numo::UInt32', 'Numo::UInt64'].include?(arr_type_str) type = '%.10g' if ['Numo::SFloat', 'Numo::DFloat'].include?(arr_type_str) type end def dump_libsvm_line(label, ftvec, label_type, value_type, zero_based) line = dump_label(label, label_type.to_s) ftvec.to_a.each_with_index do |val, n| idx = n + (zero_based == false ? 1 : 0) line += format(" %d:#{value_type}", idx, val) if val != 0 end line end def dump_label(label, label_type_str) if label.is_a?(Array) label.map { |lbl| format(label_type_str, lbl) }.join(',') else format(label_type_str, label) end end end end end