Sha256: 90877780ab589fd6e946ae2fe43b75a039aef8df8fb045b86d40132523e43d34

Contents?: true

Size: 535 Bytes

Versions: 21

Compression:

Stored size: 535 Bytes

Contents

[BLAST allows * and - in amino acid sequences and - in nucleotide sequences][1].
The sequences in this directory present an example of the same.

**Thursday, 4th February 2016**

_BLAST 2.2.31+_

- `blastdbcmd -outfmt '%s'` returns illegal 0xFF UTF-8 byte if it encounters \*
  or \- in an amino acide sequence. `blastdbcmd -outfmt '%f'` works fine
  though.
- Both `blastdbcmd -outfmt '%s'` and `blastdbcmd -outfmt '%f'` returns N if it
  encounters \- in a nucleotide sequence.

[1]: http://blast.ncbi.nlm.nih.gov/blastcgihelp.shtml

Version data entries

21 entries across 21 versions & 1 rubygems

Version Path
sequenceserver-2.0.0.rc7 spec/database/funky_sequences/README.md
sequenceserver-2.0.0.rc6 spec/database/funky_sequences/README.md
sequenceserver-2.0.0.rc5 spec/database/funky_sequences/README.md
sequenceserver-2.0.0.rc4 spec/database/funky_sequences/README.md
sequenceserver-2.0.0.rc3 spec/database/funky_sequences/README.md
sequenceserver-2.0.0.rc2 spec/database/funky_sequences/README.md
sequenceserver-2.0.0.rc1 spec/database/funky_sequences/README.md
sequenceserver-2.0.0.beta4 spec/database/funky_sequences/README.md
sequenceserver-2.0.0.beta3 spec/database/funky_sequences/README.md
sequenceserver-2.0.0.beta1 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta12 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta11 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta10 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta8 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta7 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta6 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta5 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta4 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta3 spec/database/funky_sequences/README.md
sequenceserver-1.1.0.beta2 spec/database/funky_sequences/README.md