--- !ruby/object:Gem::Specification name: bio-samtools-wrapper version: !ruby/object:Gem::Version version: 2.7.0 platform: ruby authors: - Rob Ellis autorequire: bindir: bin cert_chain: [] date: 2024-09-25 00:00:00.000000000 Z dependencies: - !ruby/object:Gem::Dependency name: bio-svgenes requirement: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: 0.4.1 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: 0.4.1 - !ruby/object:Gem::Dependency name: bio requirement: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: 1.4.2 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: 1.4.2 - !ruby/object:Gem::Dependency name: shoulda requirement: !ruby/object:Gem::Requirement requirements: - - '=' - !ruby/object:Gem::Version version: '2.10' type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - '=' - !ruby/object:Gem::Version version: '2.10' - !ruby/object:Gem::Dependency name: test-unit requirement: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: '0' type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: '0' - !ruby/object:Gem::Dependency name: juwelier requirement: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: '0' type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: '0' - !ruby/object:Gem::Dependency name: rack requirement: !ruby/object:Gem::Requirement requirements: - - '=' - !ruby/object:Gem::Version version: 1.6.4 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - '=' - !ruby/object:Gem::Version version: 1.6.4 description: "Wrapper of samtools for ruby. \n\n This project was born from the need to add support of BAM files to \n the gee_fu genome browser (http://github.com/danmaclean/gee_fu)." email: rob.ellis@jic.ac.uk executables: - bam_consensus.rb extensions: - ext/mkrf_conf.rb extra_rdoc_files: - LICENSE.txt - README.md files: - ".document" - ".travis.yml" - Gemfile - LICENSE.txt - README.md - Rakefile - VERSION - bin/bam_consensus.rb - bio-samtools-wrapper.gemspec - doc/Bio.html - doc/Bio/DB.html - doc/Bio/DB/Alignment.html - doc/Bio/DB/Pileup.html - doc/Bio/DB/SAM.html - doc/Bio/DB/SAM/Library.html - doc/Bio/DB/SAM/Tools.html - doc/Bio/DB/Tag.html - doc/Bio/DB/Vcf.html - doc/LICENSE_txt.html - doc/created.rid - doc/fonts.css - doc/fonts/Lato-Light.ttf - doc/fonts/Lato-LightItalic.ttf - doc/fonts/Lato-Regular.ttf - doc/fonts/Lato-RegularItalic.ttf - doc/fonts/SourceCodePro-Bold.ttf - doc/fonts/SourceCodePro-Regular.ttf - doc/images/add.png - doc/images/arrow_up.png - doc/images/brick.png - doc/images/brick_link.png - doc/images/bug.png - doc/images/bullet_black.png - doc/images/bullet_toggle_minus.png - doc/images/bullet_toggle_plus.png - doc/images/date.png - doc/images/delete.png - doc/images/find.png - doc/images/loadingAnimation.gif - doc/images/macFFBgHack.png - doc/images/package.png - doc/images/page_green.png - doc/images/page_white_text.png - doc/images/page_white_width.png - doc/images/plugin.png - doc/images/ruby.png - doc/images/tag_blue.png - doc/images/tag_green.png - doc/images/transparent.png - doc/images/wrench.png - doc/images/wrench_orange.png - doc/images/zoom.png - doc/index.html - doc/js/darkfish.js - doc/js/jquery.js - doc/js/navigation.js - doc/js/search.js - doc/js/search_index.js - doc/js/searcher.js - doc/rdoc.css - doc/table_of_contents.html - ext/Makefile-bioruby.patch - ext/Makefile-suse.patch - ext/mkrf_conf.rb - lib/bio-samtools-wrapper.rb - lib/bio/BIOExtensions.rb - lib/bio/db/alignment.rb - lib/bio/db/fastadb.rb - lib/bio/db/pileup.rb - lib/bio/db/sam.rb - lib/bio/db/sam/external/COPYING - lib/bio/db/sam/external/VERSION - lib/bio/db/sam/library.rb - lib/bio/db/vcf.rb - test/.gitignore - test/helper.rb - test/sample.vcf - test/samples/.gitignore - test/samples/LCI/NC_001988.ffn - test/samples/LCI/test.bam - test/samples/LCI/test.bam.bai - test/samples/small/dupes.bam - test/samples/small/dupes.sam - test/samples/small/ids2.txt - test/samples/small/map_for_reheader.sam - test/samples/small/map_to_merge1.bam - test/samples/small/map_to_merge1.bam.bai - test/samples/small/map_to_merge1.sam - test/samples/small/map_to_merge2.bam - test/samples/small/map_to_merge2.bam.bai - test/samples/small/map_to_merge2.sam - test/samples/small/no_md.sam - test/samples/small/sorted.bam - test/samples/small/sorted.bam.bai - test/samples/small/test.sai - test/samples/small/test.tam - test/samples/small/test_chr.fasta - test/samples/small/test_chr.fasta.1.bt2 - test/samples/small/test_chr.fasta.2.bt2 - test/samples/small/test_chr.fasta.3.bt2 - test/samples/small/test_chr.fasta.4.bt2 - test/samples/small/test_chr.fasta.amb - test/samples/small/test_chr.fasta.ann - test/samples/small/test_chr.fasta.bwt - test/samples/small/test_chr.fasta.pac - test/samples/small/test_chr.fasta.rbwt - test/samples/small/test_chr.fasta.rev.1.bt2 - test/samples/small/test_chr.fasta.rev.2.bt2 - test/samples/small/test_chr.fasta.rpac - test/samples/small/test_chr.fasta.rsa - test/samples/small/test_chr.fasta.sa - test/samples/small/test_cov.svg - test/samples/small/test_fastadb.fasta - test/samples/small/testu.bam - test/samples/small/testu.bed - test/test_bio-samtools-wrapper.rb - test/test_fastadb.rb - test/test_pileup.rb - test/test_sam.rb - test/test_vcf.rb - tutorial/tutorial.html - tutorial/tutorial.md - tutorial/tutorial.pdf homepage: http://github.com/helios/bioruby-samtools licenses: - GPL-3.0 metadata: {} post_install_message: rdoc_options: [] require_paths: - lib required_ruby_version: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: '0' required_rubygems_version: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: '0' requirements: [] rubygems_version: 3.5.16 signing_key: specification_version: 4 summary: Binder of samtools for ruby, on the top of FFI. test_files: []