require 'spec_helper'

describe Bolognese::Metadata, vcr: true do
  context "write metadata as jats xml" do
    it "with data citation" do
      input = "10.7554/eLife.01567"
      subject = Bolognese::Metadata.new(input: input, from: "crossref")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("journal")
      expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
      expect(jats.dig("source")).to eq("eLife")
      expect(jats.dig("person_group", "name").length).to eq(5)
      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
      expect(jats.dig("month")).to eq("02")
      expect(jats.dig("day")).to eq("11")
    end

    it "with ORCID ID" do
      input = "https://doi.org/10.1155/2012/291294"
      subject = Bolognese::Metadata.new(input: input, from: "crossref")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("journal")
      expect(jats.dig("article_title")).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
      expect(jats.dig("source")).to eq("Pulmonary Medicine")
      expect(jats.dig("person_group", "name").length).to eq(7)
      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Thanassi", "given_names"=>"Wendy")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2012", "__content__"=>"2012")
    end

    it "with editor" do
      input = "https://doi.org/10.1371/journal.pone.0000030"
      subject = Bolognese::Metadata.new(input: input, from: "crossref")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("journal")
      expect(jats.dig("article_title")).to eq("Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization–Not Catalytic Inactivity–of the Mutant Enzymes")
      expect(jats.dig("source")).to eq("PLoS ONE")
      expect(jats.dig("person_group", 0, "name").length).to eq(5)
      expect(jats.dig("person_group", 0, "name").first).to eq("surname"=>"Ralser", "given_names"=>"Markus")
      expect(jats.dig("person_group", 1, "name")).to eq("surname"=>"Janbon", "given_names"=>"Guilhem")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2006-12-20", "__content__"=>"2006")
      expect(jats.dig("month")).to eq("12")
      expect(jats.dig("day")).to eq("20")
      expect(jats.dig("fpage")).to eq("e30")
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.1371/journal.pone.0000030")
    end

    it "book chapter" do
      input = "https://doi.org/10.5005/jp/books/12414_3"
      subject = Bolognese::Metadata.new(input: input, from: "crossref")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("chapter")
      expect(jats.dig("chapter_title")).to eq("Chapter-02 Physical Examinations")
      expect(jats.dig("source")).to eq("Jaypee Brothers Medical Publishers (P) Ltd.")
      expect(jats.dig("person_group", "name")).to eq("surname"=>"Saha", "given_names"=>"Ashis")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2015", "__content__"=>"2015")
      expect(jats.dig("fpage")).to eq("27")
      expect(jats.dig("lpage")).to eq("145")
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5005/jp/books/12414_3")
    end

    it "Crossref DOI" do
      input = fixture_path + "crossref.bib"
      subject = Bolognese::Metadata.new(input: input, from: "bibtex")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("journal")
      expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
      expect(jats.dig("source")).to eq("eLife")
      expect(jats.dig("person_group", "name").length).to eq(5)
      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2014", "__content__"=>"2014")
      expect(jats.dig("month")).to be_nil
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
    end

    it "BlogPosting Citeproc JSON" do
      input = fixture_path + "citeproc.json"
      subject = Bolognese::Metadata.new(input: input, from: "citeproc")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to be_nil
      expect(jats.dig("source")).to eq("Eating your own Dog Food")
      expect(jats.dig("publisher_name")).to eq("DataCite")
      expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20", "__content__"=>"2016")
      expect(jats.dig("month")).to eq("12")
      expect(jats.dig("day")).to eq("20")
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/4k3m-nyvg")
    end

    it "rdataone" do
      input = fixture_path + 'codemeta.json'
      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("software")
      expect(jats.dig("source")).to eq("R Interface to the DataONE REST API")
      expect(jats.dig("publisher_name")).to eq("https://cran.r-project.org")
      expect(jats.dig("person_group", "name").length).to eq(3)
      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Jones", "given_names"=>"Matt")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-05-27", "__content__"=>"2016")
      expect(jats.dig("month")).to eq("05")
      expect(jats.dig("day")).to eq("27")
      expect(jats.dig("version")).to eq("2.0.0")
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5063/f1m61h5x")
    end

    it "maremma" do
      input = "https://github.com/datacite/maremma"
      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("software")
      expect(jats.dig("source")).to eq("Maremma: a Ruby library for simplified network calls")
      expect(jats.dig("publisher_name")).to eq("DataCite")
      expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2017-02-24", "__content__"=>"2017")
      expect(jats.dig("month")).to eq("02")
      expect(jats.dig("day")).to eq("24")
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/qeg0-3gm3")
    end

    it "Text pass-thru" do
      input = "https://doi.org/10.23640/07243.5153971"
      subject = Bolognese::Metadata.new(input: input, from: "datacite")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("journal")
      expect(jats.dig("article_title")).to eq("Recommendation of: ORCID Works Metadata Working Group")
      expect(jats.dig("source")).to eq("Figshare")
      expect(jats.dig("person_group", "name").length).to eq(20)
      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Paglione", "given_names"=>"Laura")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2017", "__content__"=>"2017")
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.23640/07243.5153971")
    end

    it "Dataset in schema 4.0" do
      input = "https://doi.org/10.5061/DRYAD.8515"
      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("data")
      expect(jats.dig("data_title")).to eq("Data from: A new malaria agent in African hominids.")
      expect(jats.dig("source")).to eq("Dryad Digital Repository")
      expect(jats.dig("person_group", "name").length).to eq(8)
      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Ollomo", "given_names"=>"Benjamin")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2011", "__content__"=>"2011")
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5061/dryad.8515")
    end

    it "with data citation schema.org" do
      input = "https://blog.datacite.org/eating-your-own-dog-food/"
      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to be_nil
      expect(jats.dig("source")).to eq("Eating your own Dog Food")
      expect(jats.dig("publisher_name")).to eq("DataCite")
      expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20", "__content__"=>"2016")
      expect(jats.dig("month")).to eq("12")
      expect(jats.dig("day")).to eq("20")
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/4k3m-nyvg")
    end
  end

  context "change metadata as datacite xml" do
    it "with data citation" do
      input = "10.7554/eLife.01567"
      subject = Bolognese::Metadata.new(input: input, from: "crossref")
      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
      expect(jats.dig("publication_type")).to eq("journal")
      expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
      expect(jats.dig("source")).to eq("eLife")
      expect(jats.dig("person_group", "name").length).to eq(5)
      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
      expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
      expect(jats.dig("month")).to eq("02")
      expect(jats.dig("day")).to eq("11")
      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
    end
  end
end