--- !ruby/object:Gem::Specification 
name: full_lengther_next
version: !ruby/object:Gem::Version 
  prerelease: 
  version: 0.0.1
platform: ruby
authors: 
- Noe Fernandez & Dario Guerrero
autorequire: 
bindir: bin
cert_chain: []

date: 2012-02-06 00:00:00 Z
dependencies: 
- !ruby/object:Gem::Dependency 
  name: xml-simple
  prerelease: false
  requirement: &id001 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        version: 1.0.12
  type: :runtime
  version_requirements: *id001
- !ruby/object:Gem::Dependency 
  name: scbi_blast
  prerelease: false
  requirement: &id002 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        version: 0.0.32
  type: :runtime
  version_requirements: *id002
- !ruby/object:Gem::Dependency 
  name: scbi_mapreduce
  prerelease: false
  requirement: &id003 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        version: 0.0.29
  type: :runtime
  version_requirements: *id003
- !ruby/object:Gem::Dependency 
  name: scbi_fasta
  prerelease: false
  requirement: &id004 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        version: 0.1.7
  type: :runtime
  version_requirements: *id004
- !ruby/object:Gem::Dependency 
  name: scbi_plot
  prerelease: false
  requirement: &id005 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        version: 0.0.6
  type: :runtime
  version_requirements: *id005
- !ruby/object:Gem::Dependency 
  name: hoe
  prerelease: false
  requirement: &id006 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        version: 2.8.0
  type: :development
  version_requirements: *id006
description: "FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and in a distributed way to minimise computing time. It is able to classify unigenes to full-length, 5\xE2\x80\x99-end, 3\xE2\x80\x99-end and internal, suggesting which unknown genes are coding or not. It will be also shown that FULL-LENGTHERNEXT fixes frame shifts, one of the main mistake found in wrong entries of full-length sequences databases, and it is a fast tool to compare different transcriptome assemblies."
email: 
- noeisneo@gmail.com & dariogf@gmail.com
executables: 
- download_fln_dbs.rb
- make_user_db.rb
- full_lengther_next
extensions: []

extra_rdoc_files: 
- History.txt
- Manifest.txt
- PostInstall.txt
files: 
- bin/download_fln_dbs.rb
- bin/make_user_db.rb
- bin/full_lengther_next
- History.txt
- lib/full_lengther_next/classes/common_functions.rb
- lib/full_lengther_next/classes/fl2_stats.rb
- lib/full_lengther_next/classes/fl_analysis.rb
- lib/full_lengther_next/classes/fl_string_utils.rb
- lib/full_lengther_next/classes/lcs.rb
- lib/full_lengther_next/classes/my_worker.rb
- lib/full_lengther_next/classes/my_worker_manager.rb
- lib/full_lengther_next/classes/orf.rb
- lib/full_lengther_next/classes/sequence.rb
- lib/full_lengther_next/classes/test_code.rb
- lib/full_lengther_next/classes/une_los_hit.rb
- lib/full_lengther_next.rb
- Manifest.txt
- PostInstall.txt
- Rakefile
- README.rdoc
- script/console
- script/destroy
- script/generate
- test/test_full_lengther_next.rb
- test/test_helper.rb
homepage: http://www.scbi.uma.es/downloads
licenses: []

post_install_message: PostInstall.txt
rdoc_options: 
- --main
- README.rdoc
require_paths: 
- lib
required_ruby_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      version: "0"
required_rubygems_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      version: "0"
requirements: []

rubyforge_project: full_lengther_next
rubygems_version: 1.7.2
signing_key: 
specification_version: 3
summary: FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in parallel and in a distributed way to minimise computing time
test_files: 
- test/test_full_lengther_next.rb
- test/test_helper.rb