Contents

require File.expand_path(File.dirname(__FILE__) + '/../../../test_helper')
require 'rbbt/persist'
require 'rbbt/annotations'
require 'rbbt/util/tmpfile'
require 'test/unit'

module TestAnnotation
  extend Annotation

  self.annotation :test_annotation
end

class TestPersistTSVCDB < Test::Unit::TestCase

  def test_organism
    require 'rbbt/sources/organism'
    TmpFile.with_file nil do |tmp_file|
      file = CMD.cmd("head -n 1000000", :in => Organism.identifiers("Hsa").open, :pipe => true)
      tsv = Organism.identifiers("Hsa").tsv(:key_field => "Associated Gene Name", :fields => ["Ensembl Gene ID"], :type => :single, :persist => true, :persist_engine => "CDB", :persist_dir => tmp_file)
      assert_equal "ENSG00000141510", tsv["TP53"]
    end
  end
end

Version data entries

29 entries across 29 versions & 1 rubygems

Version	Path
rbbt-util-5.6.8	test/rbbt/persist/tsv/test_cdb.rb
rbbt-util-5.6.7	test/rbbt/persist/tsv/test_cdb.rb
rbbt-util-5.6.6	test/rbbt/persist/tsv/test_cdb.rb
rbbt-util-5.6.5	test/rbbt/persist/tsv/test_cdb.rb
rbbt-util-5.6.4	test/rbbt/persist/tsv/test_cdb.rb
rbbt-util-5.6.3	test/rbbt/persist/tsv/test_cdb.rb
rbbt-util-5.6.2	test/rbbt/persist/tsv/test_cdb.rb
rbbt-util-5.6.1	test/rbbt/persist/tsv/test_cdb.rb
rbbt-util-5.6.0	test/rbbt/persist/tsv/test_cdb.rb