Contents

require 'GeneValidatorApp'
require 'GeneValidatorApp/database'
require 'rspec'

module GeneValidatorApp
  describe 'Database' do
    let 'root' do
      GeneValidatorApp.root
    end

    let 'empty_config' do
      File.join(root, 'spec', 'empty_config.yml')
    end

    let 'database_dir' do
      File.join(root, 'spec', 'database')
    end

    let 'database_dir_no_db' do
      File.join(root, 'spec', 'database', 'proteins', 'Cardiocondyla_obscurior')
    end

    let 'app' do
      GeneValidatorApp.init(config_file: empty_config,
                            database_dir: database_dir)
    end

    it 'can tell BLAST+ databases in a directory' do
    end

    it 'can tell NCBI multipart database name' do
      #   Database.multipart_database_name?('/home/ben/pd.ben/sequenceserver/db/nr.00').should be_true
      #   Database.multipart_database_name?('/home/ben/pd.ben/sequenceserver/db/nr').should be_false
      #   Database.multipart_database_name?('/home/ben/pd.ben/sequenceserver/db/img3.5.finished.faa.01').should be_true
    end
  end
end

Version data entries

2 entries across 2 versions & 1 rubygems

Version	Path
genevalidatorapp-1.4.13	spec/database_spec.rb
genevalidatorapp-1.4.12	spec/database_spec.rb