--- !ruby/object:Gem::Specification name: abstractor version: !ruby/object:Gem::Version version: 4.4.5 platform: ruby authors: - Michael Gurley, Yulia Bushmanova autorequire: bindir: bin cert_chain: [] date: 2015-06-30 00:00:00.000000000 Z dependencies: - !ruby/object:Gem::Dependency name: rails requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: '4.1' type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: '4.1' - !ruby/object:Gem::Dependency name: jquery-rails requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 4.0.0 - - ! '>=' - !ruby/object:Gem::Version version: 4.0.0 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 4.0.0 - - ! '>=' - !ruby/object:Gem::Version version: 4.0.0 - !ruby/object:Gem::Dependency name: jquery-ui-rails requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: '4.2' - - ! '>=' - !ruby/object:Gem::Version version: 4.2.0 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: '4.2' - - ! '>=' - !ruby/object:Gem::Version version: 4.2.0 - !ruby/object:Gem::Dependency name: haml requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 4.0.5 - - ! '>=' - !ruby/object:Gem::Version version: 4.0.5 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 4.0.5 - - ! '>=' - !ruby/object:Gem::Version version: 4.0.5 - !ruby/object:Gem::Dependency name: sass-rails requirement: !ruby/object:Gem::Requirement requirements: - - ! '>=' - !ruby/object:Gem::Version version: 4.0.0 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ! '>=' - !ruby/object:Gem::Version version: 4.0.0 - !ruby/object:Gem::Dependency name: paper_trail requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 3.0.0 - - ! '>=' - !ruby/object:Gem::Version version: 3.0.0 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 3.0.0 - - ! '>=' - !ruby/object:Gem::Version version: 3.0.0 - !ruby/object:Gem::Dependency name: stanford-core-nlp-abstractor requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 0.5.3 - - ! '>=' - !ruby/object:Gem::Version version: 0.5.3 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 0.5.3 - - ! '>=' - !ruby/object:Gem::Version version: 0.5.3 - !ruby/object:Gem::Dependency name: rubyzip requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.1.0 - - ! '>=' - !ruby/object:Gem::Version version: 1.1.0 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.1.0 - - ! '>=' - !ruby/object:Gem::Version version: 1.1.0 - !ruby/object:Gem::Dependency name: coffee-rails requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: '4.0' - - ! '>=' - !ruby/object:Gem::Version version: 4.0.0 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: '4.0' - - ! '>=' - !ruby/object:Gem::Version version: 4.0.0 - !ruby/object:Gem::Dependency name: httparty requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 0.13.0 - - ! '>=' - !ruby/object:Gem::Version version: 0.13.3 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 0.13.0 - - ! '>=' - !ruby/object:Gem::Version version: 0.13.3 - !ruby/object:Gem::Dependency name: sqlite3 requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.3.9 - - ! '>=' - !ruby/object:Gem::Version version: 1.3.9 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.3.9 - - ! '>=' - !ruby/object:Gem::Version version: 1.3.9 - !ruby/object:Gem::Dependency name: rspec-rails requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 3.0.0 - - ! '>=' - !ruby/object:Gem::Version version: 3.0.0 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 3.0.0 - - ! '>=' - !ruby/object:Gem::Version version: 3.0.0 - !ruby/object:Gem::Dependency name: factory_girl_rails requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 4.4.0 - - ! '>=' - !ruby/object:Gem::Version version: 4.4.0 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 4.4.0 - - ! '>=' - !ruby/object:Gem::Version version: 4.4.0 - !ruby/object:Gem::Dependency name: cucumber-rails requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.4.0 - - ! '>=' - !ruby/object:Gem::Version version: 1.4.0 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.4.0 - - ! '>=' - !ruby/object:Gem::Version version: 1.4.0 - !ruby/object:Gem::Dependency name: capybara requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 2.4.0 - - ! '>=' - !ruby/object:Gem::Version version: 2.4.0 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 2.4.0 - - ! '>=' - !ruby/object:Gem::Version version: 2.4.0 - !ruby/object:Gem::Dependency name: selenium-webdriver requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 2.42.0 - - ! '>=' - !ruby/object:Gem::Version version: 2.42.0 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 2.42.0 - - ! '>=' - !ruby/object:Gem::Version version: 2.42.0 - !ruby/object:Gem::Dependency name: database_cleaner requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.3.0 - - ! '>=' - !ruby/object:Gem::Version version: 1.3.0 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.3.0 - - ! '>=' - !ruby/object:Gem::Version version: 1.3.0 - !ruby/object:Gem::Dependency name: ansi requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.4.3 - - ! '>=' - !ruby/object:Gem::Version version: 1.4.3 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 1.4.3 - - ! '>=' - !ruby/object:Gem::Version version: 1.4.3 - !ruby/object:Gem::Dependency name: sprockets requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 2.12.1 - - ! '>=' - !ruby/object:Gem::Version version: 2.12.1 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 2.12.1 - - ! '>=' - !ruby/object:Gem::Version version: 2.12.1 - !ruby/object:Gem::Dependency name: yard requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 0.8.7.3 - - ! '>=' - !ruby/object:Gem::Version version: 0.8.7.3 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 0.8.7.3 - - ! '>=' - !ruby/object:Gem::Version version: 0.8.7.3 - !ruby/object:Gem::Dependency name: redcarpet requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 3.1.1 - - ! '>=' - !ruby/object:Gem::Version version: 3.1.1 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: 3.1.1 - - ! '>=' - !ruby/object:Gem::Version version: 3.1.1 - !ruby/object:Gem::Dependency name: webmock requirement: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: '1.2' - - ! '>=' - !ruby/object:Gem::Version version: 1.2.0 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement requirements: - - ~> - !ruby/object:Gem::Version version: '1.2' - - ! '>=' - !ruby/object:Gem::Version version: 1.2.0 description: A Rails engine gem for deriving discrete data points from narrative text via natural language processing (NLP). The gem includes a user interface to present the abstracted data points for confirmation/revision by curator. email: - michaeljamesgurley@gmail.com, y.bushmanova@gmail.com executables: [] extensions: [] extra_rdoc_files: [] files: - MIT-LICENSE - README.md - Rakefile - app/assets/images/abstractor/add.png - app/assets/images/abstractor/ajax-loader.gif - app/assets/images/abstractor/bar.gif - app/assets/images/abstractor/bti_logo.jpg - app/assets/images/abstractor/bullet_arrow_down.png - app/assets/images/abstractor/bullet_arrow_up.png - app/assets/images/abstractor/cog.png - app/assets/images/abstractor/delete.png - app/assets/images/abstractor/edit.png - app/assets/images/abstractor/excel.png - app/assets/images/abstractor/favicon.ico - app/assets/images/abstractor/greencheck.gif - app/assets/images/abstractor/loading.gif - app/assets/images/abstractor/nu_logo.jpg - app/assets/images/abstractor/nubic_logo.png - app/assets/images/abstractor/page.png - app/assets/images/abstractor/page_green.png - app/assets/images/abstractor/rails.png - app/assets/images/abstractor/robert_h_lurie.jpg - app/assets/images/abstractor/show.png - app/assets/images/abstractor/switch_minus.gif - app/assets/images/abstractor/switch_plus.gif - app/assets/javascripts/abstractor/abstractor.js.coffee - app/assets/javascripts/abstractor/application.js - app/assets/javascripts/abstractor/combobox.js - app/assets/javascripts/abstractor/jquery/jquery.form.js - app/assets/stylesheets/abstractor/abstractor_abstractions.css.scss - app/assets/stylesheets/abstractor/application.css.scss - app/assets/stylesheets/abstractor/jquery.ui.override.css.scss - app/controllers/abstractor/abstractor_abstraction_groups_controller.rb - app/controllers/abstractor/abstractor_abstraction_schemas_controller.rb - app/controllers/abstractor/abstractor_abstractions_controller.rb - app/controllers/abstractor/abstractor_suggestions_controller.rb - app/controllers/abstractor/application_controller.rb - app/helpers/abstractor/application_helper.rb - app/models/abstractor/abstractor_abstraction.rb - app/models/abstractor/abstractor_abstraction_group.rb - app/models/abstractor/abstractor_abstraction_group_member.rb - app/models/abstractor/abstractor_abstraction_schema.rb - app/models/abstractor/abstractor_abstraction_schema_object_value.rb - app/models/abstractor/abstractor_abstraction_schema_predicate_variant.rb - app/models/abstractor/abstractor_abstraction_schema_relation.rb - app/models/abstractor/abstractor_abstraction_source.rb - app/models/abstractor/abstractor_abstraction_source_type.rb - app/models/abstractor/abstractor_indirect_source.rb - app/models/abstractor/abstractor_object_type.rb - app/models/abstractor/abstractor_object_value.rb - app/models/abstractor/abstractor_object_value_variant.rb - app/models/abstractor/abstractor_relation_type.rb - app/models/abstractor/abstractor_rule_type.rb - app/models/abstractor/abstractor_section.rb - app/models/abstractor/abstractor_section_name_variant.rb - app/models/abstractor/abstractor_section_type.rb - app/models/abstractor/abstractor_subject.rb - app/models/abstractor/abstractor_subject_group.rb - app/models/abstractor/abstractor_subject_group_member.rb - app/models/abstractor/abstractor_subject_relation.rb - app/models/abstractor/abstractor_suggestion.rb - app/models/abstractor/abstractor_suggestion_object_value.rb - app/models/abstractor/abstractor_suggestion_source.rb - app/models/abstractor/abstractor_suggestion_status.rb - app/views/abstractor/abstractor_abstraction_groups/_form.html.haml - app/views/abstractor/abstractor_abstraction_groups/edit.html.haml - app/views/abstractor/abstractor_abstractions/_abstraction_history.html.haml - app/views/abstractor/abstractor_abstractions/_fields.html.haml - app/views/abstractor/abstractor_abstractions/_grouped_abstractions_list.html.haml - app/views/abstractor/abstractor_abstractions/_list.html.haml - app/views/abstractor/abstractor_abstractions/_ungrouped_abstractions_list.html.haml - app/views/abstractor/abstractor_abstractions/edit.html.haml - app/views/abstractor/abstractor_abstractions/show.html.haml - app/views/abstractor/shared/_error_messages.html.haml - config/cucumber.yml - config/routes.rb - db/migrate/20131227205140_create_abstractor_object_types.rb - db/migrate/20131227205219_create_abstractor_object_values.rb - db/migrate/20131227205256_create_abstractor_object_value_variants.rb - db/migrate/20131227205320_create_abstractor_relation_types.rb - db/migrate/20131227205354_create_abstractor_rule_types.rb - db/migrate/20131227205432_create_abstractor_abstraction_schemas.rb - db/migrate/20131227205456_create_abstractor_abstraction_schema_object_values.rb - db/migrate/20131227205529_create_abstractor_abstraction_schema_predicate_variants.rb - db/migrate/20131227205610_create_abstractor_abstraction_schema_relations.rb - db/migrate/20131227205652_create_abstractor_subjects.rb - db/migrate/20131227205732_create_abstractor_subject_relations.rb - db/migrate/20131227205831_create_abstractor_abstraction_sources.rb - db/migrate/20131227210211_create_abstractor_subject_groups.rb - db/migrate/20131227210244_create_abstractor_subject_group_members.rb - db/migrate/20131227210350_create_abstractor_abstraction_groups.rb - db/migrate/20131227210353_create_abstractor_abstraction_group_members.rb - db/migrate/20131227211050_create_abstractor_suggestion_statuses.rb - db/migrate/20131227211303_create_abstractor_abstractions.rb - db/migrate/20131227213427_create_abstractor_suggestions.rb - db/migrate/20131228041944_create_abstractor_suggestion_object_values.rb - db/migrate/20131228041945_create_abstractor_suggestion_sources.rb - db/migrate/20140618140759_add_custom_method_to_abstractor_abstraction_sources.rb - db/migrate/20140618140828_add_custom_method_to_abstractor_suggestion_sources.rb - db/migrate/20140716184049_add_dynamic_list_method_to_abstractor_subjects.rb - db/migrate/20140718014952_refactor_abstractor_rule_types.rb - db/migrate/20140803205149_add_custom_explanation_to_abstractor_suggestion_sources.rb - db/migrate/20140816005228_add_namespace_to_abstractor_subjects.rb - db/migrate/20141028020332_add_cardinality_to_abstractor_subject_group.rb - db/migrate/20141107171413_add_sectioning.rb - db/migrate/20141120044606_add_system_generated_to_abstractor_abstraction_groups.rb - db/migrate/20150110002921_create_indexes_for_performance.rb - db/migrate/20150223033848_add_custom_nlp_provider_to_abstractor_abstraction_sources.rb - db/migrate/20150317172523_add_properties_to_abstractor_object_values.rb - db/migrate/20150317204748_add_vocabulary_columns_to_abstractor_object_values.rb - db/migrate/20150422135935_add_display_order_to_abstractor_abstraction_schema_object_values.rb - db/migrate/20150423045055_add_subtype_to_abstractor_subject_groups.rb - db/migrate/20150505022228_add_subtype_to_abstractor_abstraction_groups.rb - db/seeds.rb - lib/abstractor.rb - lib/abstractor/abstractable.rb - lib/abstractor/core_ext/string.rb - lib/abstractor/custom_nlp_provider.rb - lib/abstractor/engine.rb - lib/abstractor/enum.rb - lib/abstractor/methods/controllers/abstractor_abstraction_groups_controller.rb - lib/abstractor/methods/controllers/abstractor_abstraction_schemas_controller.rb - lib/abstractor/methods/controllers/abstractor_abstractions_controller.rb - lib/abstractor/methods/controllers/abstractor_suggestions_controller.rb - lib/abstractor/methods/models/abstractor_abstraction.rb - lib/abstractor/methods/models/abstractor_abstraction_group.rb - lib/abstractor/methods/models/abstractor_abstraction_group_member.rb - lib/abstractor/methods/models/abstractor_abstraction_schema.rb - lib/abstractor/methods/models/abstractor_abstraction_schema_object_value.rb - lib/abstractor/methods/models/abstractor_abstraction_schema_predicate_variant.rb - lib/abstractor/methods/models/abstractor_abstraction_schema_relation.rb - lib/abstractor/methods/models/abstractor_abstraction_source.rb - lib/abstractor/methods/models/abstractor_abstraction_source_type.rb - lib/abstractor/methods/models/abstractor_indirect_source.rb - lib/abstractor/methods/models/abstractor_object_type.rb - lib/abstractor/methods/models/abstractor_object_value.rb - lib/abstractor/methods/models/abstractor_object_value_variant.rb - lib/abstractor/methods/models/abstractor_relation_type.rb - lib/abstractor/methods/models/abstractor_rule_type.rb - lib/abstractor/methods/models/abstractor_section.rb - lib/abstractor/methods/models/abstractor_section_name_variant.rb - lib/abstractor/methods/models/abstractor_section_type.rb - lib/abstractor/methods/models/abstractor_subject.rb - lib/abstractor/methods/models/abstractor_subject_group.rb - lib/abstractor/methods/models/abstractor_subject_group_member.rb - lib/abstractor/methods/models/abstractor_subject_relation.rb - lib/abstractor/methods/models/abstractor_suggestion.rb - lib/abstractor/methods/models/abstractor_suggestion_object_value.rb - lib/abstractor/methods/models/abstractor_suggestion_source.rb - lib/abstractor/methods/models/abstractor_suggestion_status.rb - lib/abstractor/methods/models/soft_delete.rb - lib/abstractor/negation_detection.rb - lib/abstractor/parser.rb - lib/abstractor/serializers/abstractor_abstraction_schema_serializer.rb - lib/abstractor/setup.rb - lib/abstractor/user_interface.rb - lib/abstractor/utility.rb - lib/abstractor/version.rb - lib/generators/abstractor/install/install_generator.rb - lib/generators/abstractor/install/templates/controllers/abstractor_abstraction_groups_controller.rb - lib/generators/abstractor/install/templates/controllers/abstractor_abstraction_schemas_controller.rb - lib/generators/abstractor/install/templates/controllers/abstractor_abstractions_controller.rb - lib/generators/abstractor/install/templates/controllers/abstractor_suggestions_controller.rb - lib/generators/abstractor/install/templates/helpers/abstractions_helper.rb - lib/generators/abstractor/install/templates/models/abstractor_abstraction.rb - lib/generators/abstractor/install/templates/models/abstractor_abstraction_group.rb - lib/generators/abstractor/install/templates/models/abstractor_abstraction_group_member.rb - lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema.rb - lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema_object_value.rb - lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema_predicate_variant.rb - lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema_relation.rb - lib/generators/abstractor/install/templates/models/abstractor_abstraction_source.rb - lib/generators/abstractor/install/templates/models/abstractor_object_type.rb - lib/generators/abstractor/install/templates/models/abstractor_object_value.rb - lib/generators/abstractor/install/templates/models/abstractor_object_value_variant.rb - lib/generators/abstractor/install/templates/models/abstractor_relation_type.rb - lib/generators/abstractor/install/templates/models/abstractor_rule_type.rb - lib/generators/abstractor/install/templates/models/abstractor_subject.rb - lib/generators/abstractor/install/templates/models/abstractor_subject_group.rb - lib/generators/abstractor/install/templates/models/abstractor_subject_group_member.rb - lib/generators/abstractor/install/templates/models/abstractor_subject_relation.rb - lib/generators/abstractor/install/templates/models/abstractor_suggestion.rb - lib/generators/abstractor/install/templates/models/abstractor_suggestion_object_value.rb - lib/generators/abstractor/install/templates/models/abstractor_suggestion_source.rb - lib/generators/abstractor/install/templates/models/abstractor_suggestion_status.rb - lib/lingscope/build.xml - lib/lingscope/build/built-jar.properties - lib/lingscope/build/classes/lingscope/algorithms/AbnerTokenizer.class - lib/lingscope/build/classes/lingscope/algorithms/AnnotationComparer.class - lib/lingscope/build/classes/lingscope/algorithms/Annotator.class - lib/lingscope/build/classes/lingscope/algorithms/BaselineAnnotator.class - lib/lingscope/build/classes/lingscope/algorithms/BaselineCueAnnotator.class - lib/lingscope/build/classes/lingscope/algorithms/BaselineScopeAnnotator.class - lib/lingscope/build/classes/lingscope/algorithms/CrfAnnotator.class - lib/lingscope/build/classes/lingscope/algorithms/NegexAnnotator.class - lib/lingscope/build/classes/lingscope/algorithms/NegexCueAnnotator.class - lib/lingscope/build/classes/lingscope/algorithms/NegexScopeAnnotator.class - lib/lingscope/build/classes/lingscope/algorithms/PosTagger.class - lib/lingscope/build/classes/lingscope/algorithms/negex/GenNegEx.class - lib/lingscope/build/classes/lingscope/algorithms/negex/Sorter.class - lib/lingscope/build/classes/lingscope/drivers/AnnotatedFilesMerger.class - lib/lingscope/build/classes/lingscope/drivers/AnnotationComparerDriver.class - lib/lingscope/build/classes/lingscope/drivers/BaselineDriver.class - lib/lingscope/build/classes/lingscope/drivers/CrfDriver.class - lib/lingscope/build/classes/lingscope/drivers/CueAndPosFilesMerger.class - lib/lingscope/build/classes/lingscope/drivers/ModelTrainer.class - lib/lingscope/build/classes/lingscope/drivers/NegexDriver.class - lib/lingscope/build/classes/lingscope/drivers/PosTaggerDriver.class - lib/lingscope/build/classes/lingscope/drivers/SentencePosTagger.class - lib/lingscope/build/classes/lingscope/drivers/SentenceTagger.class - lib/lingscope/build/classes/lingscope/io/AnnotatedSentencesIO.class - lib/lingscope/build/classes/lingscope/structures/AnnotatedSentence.class - lib/lingscope/dist/README.TXT - lib/lingscope/dist/javadoc/allclasses-frame.html - lib/lingscope/dist/javadoc/allclasses-noframe.html - lib/lingscope/dist/javadoc/constant-values.html - lib/lingscope/dist/javadoc/deprecated-list.html - lib/lingscope/dist/javadoc/help-doc.html - lib/lingscope/dist/javadoc/index-files/index-1.html - lib/lingscope/dist/javadoc/index-files/index-10.html - lib/lingscope/dist/javadoc/index-files/index-11.html - lib/lingscope/dist/javadoc/index-files/index-12.html - lib/lingscope/dist/javadoc/index-files/index-13.html - lib/lingscope/dist/javadoc/index-files/index-14.html - lib/lingscope/dist/javadoc/index-files/index-15.html - lib/lingscope/dist/javadoc/index-files/index-16.html - lib/lingscope/dist/javadoc/index-files/index-2.html - lib/lingscope/dist/javadoc/index-files/index-3.html - lib/lingscope/dist/javadoc/index-files/index-4.html - lib/lingscope/dist/javadoc/index-files/index-5.html - lib/lingscope/dist/javadoc/index-files/index-6.html - lib/lingscope/dist/javadoc/index-files/index-7.html - lib/lingscope/dist/javadoc/index-files/index-8.html - lib/lingscope/dist/javadoc/index-files/index-9.html - lib/lingscope/dist/javadoc/index.html - lib/lingscope/dist/javadoc/lingscope/algorithms/AbnerTokenizer.html - lib/lingscope/dist/javadoc/lingscope/algorithms/AnnotationComparer.html - lib/lingscope/dist/javadoc/lingscope/algorithms/Annotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/BaselineAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/BaselineCueAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/BaselineScopeAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/CrfAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/NegexAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/NegexCueAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/NegexScopeAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/PosTagger.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/AbnerTokenizer.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/AnnotationComparer.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/Annotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/BaselineAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/BaselineCueAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/BaselineScopeAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/CrfAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/NegexAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/NegexCueAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/NegexScopeAnnotator.html - lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/PosTagger.html - lib/lingscope/dist/javadoc/lingscope/algorithms/negex/GenNegEx.html - lib/lingscope/dist/javadoc/lingscope/algorithms/negex/Sorter.html - lib/lingscope/dist/javadoc/lingscope/algorithms/negex/class-use/GenNegEx.html - lib/lingscope/dist/javadoc/lingscope/algorithms/negex/class-use/Sorter.html - lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-frame.html - lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-summary.html - lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-tree.html - lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-use.html - lib/lingscope/dist/javadoc/lingscope/algorithms/package-frame.html - lib/lingscope/dist/javadoc/lingscope/algorithms/package-summary.html - lib/lingscope/dist/javadoc/lingscope/algorithms/package-tree.html - lib/lingscope/dist/javadoc/lingscope/algorithms/package-use.html - lib/lingscope/dist/javadoc/lingscope/drivers/AnnotatedFilesMerger.html - lib/lingscope/dist/javadoc/lingscope/drivers/AnnotationComparerDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/BaselineDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/CrfDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/CueAndPosFilesMerger.html - lib/lingscope/dist/javadoc/lingscope/drivers/ModelTrainer.html - lib/lingscope/dist/javadoc/lingscope/drivers/NegexDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/PosTaggerDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/SentencePosTagger.html - lib/lingscope/dist/javadoc/lingscope/drivers/SentenceTagger.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/AnnotatedFilesMerger.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/AnnotationComparerDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/BaselineDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/CrfDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/CueAndPosFilesMerger.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/ModelTrainer.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/NegexDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/PosTaggerDriver.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/SentencePosTagger.html - lib/lingscope/dist/javadoc/lingscope/drivers/class-use/SentenceTagger.html - lib/lingscope/dist/javadoc/lingscope/drivers/package-frame.html - lib/lingscope/dist/javadoc/lingscope/drivers/package-summary.html - lib/lingscope/dist/javadoc/lingscope/drivers/package-tree.html - lib/lingscope/dist/javadoc/lingscope/drivers/package-use.html - lib/lingscope/dist/javadoc/lingscope/io/AnnotatedSentencesIO.html - lib/lingscope/dist/javadoc/lingscope/io/class-use/AnnotatedSentencesIO.html - lib/lingscope/dist/javadoc/lingscope/io/package-frame.html - lib/lingscope/dist/javadoc/lingscope/io/package-summary.html - lib/lingscope/dist/javadoc/lingscope/io/package-tree.html - lib/lingscope/dist/javadoc/lingscope/io/package-use.html - lib/lingscope/dist/javadoc/lingscope/structures/AnnotatedSentence.html - lib/lingscope/dist/javadoc/lingscope/structures/class-use/AnnotatedSentence.html - lib/lingscope/dist/javadoc/lingscope/structures/package-frame.html - lib/lingscope/dist/javadoc/lingscope/structures/package-summary.html - lib/lingscope/dist/javadoc/lingscope/structures/package-tree.html - lib/lingscope/dist/javadoc/lingscope/structures/package-use.html - lib/lingscope/dist/javadoc/overview-frame.html - lib/lingscope/dist/javadoc/overview-summary.html - lib/lingscope/dist/javadoc/overview-tree.html - lib/lingscope/dist/javadoc/package-list - lib/lingscope/dist/javadoc/resources/inherit.gif - lib/lingscope/dist/javadoc/stylesheet.css - lib/lingscope/dist/lib/abner.jar - lib/lingscope/dist/lib/commons-lang-2.4.jar - lib/lingscope/dist/lib/java_utils.jar - lib/lingscope/dist/lib/sptoolkit.jar - lib/lingscope/dist/lib/stanford-postagger.jar - lib/lingscope/dist/lingscope.jar - lib/lingscope/lingscope.zip - lib/lingscope/manifest.mf - lib/lingscope/nbproject/build-impl.xml - lib/lingscope/nbproject/genfiles.properties - lib/lingscope/nbproject/private/config.properties - lib/lingscope/nbproject/private/private.properties - lib/lingscope/nbproject/private/private.xml - lib/lingscope/nbproject/project.properties - lib/lingscope/nbproject/project.xml - lib/lingscope/negation_models.zip - lib/lingscope/negation_models/baseline_cue_all_both.model - lib/lingscope/negation_models/baseline_cue_all_clinical.model - lib/lingscope/negation_models/crf_cue_all_both.model - lib/lingscope/negation_models/crf_cue_all_clinical.model - lib/lingscope/negation_models/crf_scope_cue_crf_all_both.model - lib/lingscope/negation_models/crf_scope_cue_crf_all_clinical.model - lib/lingscope/negation_models/crf_scope_cue_regex_all_both.model - lib/lingscope/negation_models/crf_scope_cue_regex_all_clinical.model - lib/lingscope/negation_models/crf_scope_words_all_both.model - lib/lingscope/negation_models/crf_scope_words_all_clinical.model - lib/lingscope/negation_models/crf_scope_words_crf_all_both.model - lib/lingscope/negation_models/crf_scope_words_crf_all_clinical.model - lib/lingscope/negation_models/crf_scope_words_regex_all_both.model - lib/lingscope/negation_models/crf_scope_words_regex_all_clinical.model - lib/lingscope/src/lingscope/algorithms/AbnerTokenizer.java - lib/lingscope/src/lingscope/algorithms/AnnotationComparer.java - lib/lingscope/src/lingscope/algorithms/Annotator.java - lib/lingscope/src/lingscope/algorithms/BaselineAnnotator.java - lib/lingscope/src/lingscope/algorithms/BaselineCueAnnotator.java - lib/lingscope/src/lingscope/algorithms/BaselineScopeAnnotator.java - lib/lingscope/src/lingscope/algorithms/CrfAnnotator.java - lib/lingscope/src/lingscope/algorithms/NegexAnnotator.java - lib/lingscope/src/lingscope/algorithms/NegexCueAnnotator.java - lib/lingscope/src/lingscope/algorithms/NegexScopeAnnotator.java - lib/lingscope/src/lingscope/algorithms/PosTagger.java - lib/lingscope/src/lingscope/algorithms/negex/GenNegEx.java - lib/lingscope/src/lingscope/algorithms/negex/Sorter.java - lib/lingscope/src/lingscope/drivers/AnnotatedFilesMerger.java - lib/lingscope/src/lingscope/drivers/AnnotationComparerDriver.java - lib/lingscope/src/lingscope/drivers/BaselineDriver.java - lib/lingscope/src/lingscope/drivers/CrfDriver.java - lib/lingscope/src/lingscope/drivers/CueAndPosFilesMerger.java - lib/lingscope/src/lingscope/drivers/ModelTrainer.java - lib/lingscope/src/lingscope/drivers/NegexDriver.java - lib/lingscope/src/lingscope/drivers/PosTaggerDriver.java - lib/lingscope/src/lingscope/drivers/SentencePosTagger.java - lib/lingscope/src/lingscope/drivers/SentenceTagger.java - lib/lingscope/src/lingscope/io/AnnotatedSentencesIO.java - lib/lingscope/src/lingscope/structures/AnnotatedSentence.java - lib/setup/data/ICD-O-3_CSV-metadata/Morphenglish.csv - lib/setup/data/ICD-O-3_CSV-metadata/Morphenglish.txt - lib/setup/data/ICD-O-3_CSV-metadata/Topoenglish.csv - lib/setup/data/ICD-O-3_CSV-metadata/Topoenglish.txt - lib/setup/data/ICD-O-3_CSV-metadata/icd-o3 readme.txt - lib/setup/data/custom_site_synonyms.csv - lib/setup/data/diagnosis_categorizations.csv - lib/setup/data/high_level_primary_cns_diagnosis_categorizations.yml - lib/setup/data/icdo3_sites_with_laterality.txt - lib/setup/data/site_site_categories.txt - lib/tasks/abstractor_tasks.rake - lib/tasks/cucumber.rake homepage: http://github.com/nubic/abstractor licenses: - MIT metadata: {} post_install_message: rdoc_options: [] require_paths: - lib required_ruby_version: !ruby/object:Gem::Requirement requirements: - - ! '>=' - !ruby/object:Gem::Version version: 1.9.3 required_rubygems_version: !ruby/object:Gem::Requirement requirements: - - ! '>=' - !ruby/object:Gem::Version version: '0' requirements: [] rubyforge_project: rubygems_version: 2.4.2 signing_key: specification_version: 4 summary: A Rails engine gem for deriving discrete data points from narrative text via natural language processing (NLP). The gem includes a user interface to present the abstracted data points for confirmation/revision by curator. test_files: []