require 'forwardable'

module NpSearch
  # A class to hold sequence data
  class Sequence
    extend Forwardable
    def_delegators NpSearch, :opt

    attr_accessor :id
    attr_accessor :seq
    attr_accessor :signalp
    attr_accessor :translated_frame
    attr_accessor :orf_index
    attr_accessor :score

    def initialize(id, seq, signalp_output)
      @id               = id
      @seq              = seq
      @signalp          = signalp_output
      @translated_frame = 0 # 0 means opt[:type] == :protein
      @orf_index        = 0
      @score            = 0
    end
  end
end