Sha256: 881b6ffb6ee7f8bd890bbd939e644b0b1d8fe25ce95ea46781a16070bebfa8f6
Contents?: true
Size: 967 Bytes
Versions: 2
Compression:
Stored size: 967 Bytes
Contents
require 'slim' module NpSearch # Class that generates the output class Output class << self def to_html(input_file) templates_path = File.expand_path(File.join(__FILE__, '../../../', 'templates/contents.slim')) contents_temp = File.read(templates_path) html_content = Slim::Template.new { contents_temp }.render(NpSearch) File.open("#{input_file}.out.html", 'w') { |f| f.puts html_content } end def to_fasta(input_file, sorted_sequences, input_type) File.open("#{input_file}.out.fa", 'w') do |f| sorted_sequences.each do |s| if input_type == :protein f.puts ">#{s.id}\n#{s.signalp}#{s.seq}" elsif input_type == :nucleotide f.puts ">#{s.id}-(frame:#{s.translated_frame})" f.puts "#{s.signalp}#{s.seq}" end end end end end end end
Version data entries
2 entries across 2 versions & 1 rubygems
Version | Path |
---|---|
npsearch-2.0.1 | lib/npsearch/output.rb |
npsearch-2.0.0 | lib/npsearch/output.rb |