{ "resourceType": "MolecularSequence", "id": "fda-vcfeval-comparison", "coordinateSystem": 1, "patient": { "reference": "Patient/example" }, "referenceSeq": { "referenceSeqId": { "coding": [ { "system": "http://www.ncbi.nlm.nih.gov/nuccore", "code": "NC_000001.11" } ] }, "strand": "watson", "windowStart": 10453, "windowEnd": 101770080 }, "variant": [ { "start": 13116, "end": 13117, "observedAllele": "T", "referenceAllele": "G" } ], "quality": [ { "type": "indel", "standardSequence": { "coding": [ { "system": "https://precision.fda.gov/files/", "code": "file-BkZxBZ00bpJVk2q6x43b1YBx" } ] }, "start": 10453, "end": 101770080, "method": { "coding": [ { "system": "https://precision.fda.gov/apps/", "code": "app-BxfGF8j02pBZzZxbzZxP725P" } ], "text": "Vcfeval + Hap.py Comparison" }, "truthTP": 7749, "truthFN": 2554, "queryFP": 10670, "gtFP": 2186, "precision": 0.428005, "recall": 0.752111 }, { "type": "snp", "standardSequence": { "coding": [ { "system": "https://precision.fda.gov/files/", "code": "file-BkZxBZ00bpJVk2q6x43b1YBx" } ] }, "start": 10453, "end": 101770080, "method": { "coding": [ { "system": "https://precision.fda.gov/apps/", "code": "app-BxfGF8j02pBZzZxbzZxP725P" } ], "text": "Vcfeval + Hap.py Comparison" }, "truthTP": 92106, "truthFN": 1247, "queryFP": 21744, "gtFP": 493, "precision": 0.808602, "recall": 0.986642 } ], "repository": [ { "type": "login", "url": "https://precision.fda.gov/jobs/job-ByxYPx809jFVy21KJG74Jg3Y", "name": "FDA" } ], "meta": { "tag": [ { "system": "http://terminology.hl7.org/CodeSystem/v3-ActReason", "code": "HTEST", "display": "test health data" } ] } }