--- !ruby/object:Gem::Specification 
name: ms-error_rate
version: !ruby/object:Gem::Version 
  prerelease: false
  segments: 
  - 0
  - 0
  - 10
  version: 0.0.10
platform: ruby
authors: 
- John Prince
autorequire: 
bindir: bin
cert_chain: []

date: 2011-03-30 00:00:00 -06:00
default_executable: 
dependencies: 
- !ruby/object:Gem::Dependency 
  name: ms-core
  prerelease: false
  requirement: &id001 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        - 0
        - 2
        version: 0.0.2
  type: :runtime
  version_requirements: *id001
- !ruby/object:Gem::Dependency 
  name: ms-ident
  prerelease: false
  requirement: &id002 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        - 0
        - 20
        version: 0.0.20
  type: :runtime
  version_requirements: *id002
- !ruby/object:Gem::Dependency 
  name: spec-more
  prerelease: false
  requirement: &id003 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        version: "0"
  type: :development
  version_requirements: *id003
- !ruby/object:Gem::Dependency 
  name: jeweler
  prerelease: false
  requirement: &id004 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ~>
      - !ruby/object:Gem::Version 
        segments: 
        - 1
        - 5
        - 2
        version: 1.5.2
  type: :development
  version_requirements: *id004
- !ruby/object:Gem::Dependency 
  name: rcov
  prerelease: false
  requirement: &id005 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        version: "0"
  type: :development
  version_requirements: *id005
description: aids for creating and calculating error rates using target-decoy searches and sample validation.
email: jtprince@gmail.com
executables: 
- error_rate
- fasta_to_nuclear.rb
- fasta_to_peptide_centric_db.rb
- fasta_to_phobius.rb
- fasta_to_protein_length.rb
- generate_sbv_input_hashes.rb
- mascot_pepxml_to_peptide_hit_qvalues.rb
- phobius_to_nontransmembrane.rb
- qvalues.rb
extensions: []

extra_rdoc_files: 
- LICENSE
- README.rdoc
files: 
- .autotest
- .gitmodules
- History
- LICENSE
- README.rdoc
- Rakefile
- VERSION
- bin/error_rate
- bin/fasta_to_nuclear.rb
- bin/fasta_to_peptide_centric_db.rb
- bin/fasta_to_phobius.rb
- bin/fasta_to_protein_length.rb
- bin/generate_sbv_input_hashes.rb
- bin/mascot_pepxml_to_peptide_hit_qvalues.rb
- bin/phobius_to_nontransmembrane.rb
- bin/qvalues.rb
- lib/ms/error_rate.rb
- lib/ms/error_rate/decoy.rb
- lib/ms/error_rate/qvalue.rb
- lib/ms/error_rate/qvalue/mascot.rb
- lib/ms/error_rate/qvalue/mascot/percolator.rb
- lib/ms/error_rate/qvalue/pepxml.rb
- lib/ms/error_rate/sbv.rb
- lib/ms/error_rate/sbv/peptide_based.rb
- lib/ms/error_rate/sbv/protein_based.rb
- lib/ms/ident.rb
- lib/support/sort_by_attributes.rb
- lib/transmembrane.rb
- lib/transmembrane/phobius.rb
- lib/transmembrane/toppred.rb
- schema/peptide_hit_qvalues.pqh.tsv
- script/expert_addition.rb
- script/expert_list.rb
- script/fasta_ipi_to_ipi_decoy.rb
- script/minimal_protein_set.rb
- script/unique_seq_stats.rb
- spec/ms/error_rate/qvalue_spec.rb
- spec/ms/error_rate_spec.rb
- spec/spec_helper.rb
has_rdoc: true
homepage: http://github.com/jtprince/ms-error_rate
licenses: 
- MIT
post_install_message: 
rdoc_options: []

require_paths: 
- lib
required_ruby_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      segments: 
      - 0
      version: "0"
required_rubygems_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      segments: 
      - 0
      version: "0"
requirements: []

rubyforge_project: mspire
rubygems_version: 1.3.7
signing_key: 
specification_version: 3
summary: An mspire library for calculating error rates in MS/MS identifications (FDRs).
test_files: 
- spec/ms/error_rate/qvalue_spec.rb
- spec/ms/error_rate_spec.rb
- spec/spec_helper.rb