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require 'rbbt/ner/finder'
module EntityRESTHelpers
def finder_find(term)
return [] unless settings.respond_to? :finder and not settings.finder.nil? and not settings.finder.instances.empty?
results = settings.finder.find(term)
results.uniq.collect{|r|
info = r.info
format_string = [info[:namespace], info[:format]].compact * ":"
info[:code] = r
if not format_string.empty?
info[:value] = r + " [#{format_string}]"
else
info[:value] = r
end
score = info.delete :score
if Array === score
info[:score] = score[0]
info[:best] = score[1]
end
info[:format] ||= info[:type]
info
}.sort_by{|i| i[:score] || 0}.reverse
end
def find_entity_url(term)
if term =~ /(.*) \[(.*)\]$/
term = $1
namespace, format = $2.split(":")
format, namespace = namespace, nil if format.nil?
Entity::REST.entity_url(term, format, :organism => namespace)
else
sorted_results = finder_find(term)
organism = sorted_results.select{|r| r[:type] == 'organism' }.first
sorted_results = sorted_results.reject{|r| r[:type] == 'organism' }
i = sorted_results.first
halt 404, "Term not recognized: #{ term }" if i.nil?
organism_code = i[:namespace]
organism_code = organism[:code] unless organism.nil? or organism[:code].nil?
Entity::REST.entity_url(i[:code], i[:format], :organism => organism_code)
end
end
end
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180 entries across 180 versions & 1 rubygems