Contents

require File.expand_path(File.dirname(__FILE__) + '/spec_helper')

require 'tmpdir'

#Bio::Log::CLI.logger('stderr'); Bio::Log::CLI.trace('debug'); log = Bio::Log::LoggerPlus.new('bio-velvet_underground'); Bio::Log::CLI.configure('bio-velvet_underground')
describe "runner" do
  it "should run basic" do
    reads = File.join TEST_DATA_DIR, '3', 'Sequences'
    Dir.mktmpdir do |dir|
      Bio::Velvet::Underground::Runner.run(51,
      ['-fasta',reads],
      ['-tour_bus','no'],
      {:velvet_directory => dir}).should == 0

      File.exist?(File.join(dir, 'contigs.fa')).should == true
    end
  end
end

Version data entries

5 entries across 5 versions & 1 rubygems

Version	Path
bio-velvet_underground-0.3.1	spec/runner_spec.rb
bio-velvet_underground-0.3.0	spec/runner_spec.rb
bio-velvet_underground-0.2.1	spec/runner_spec.rb
bio-velvet_underground-0.2.0	spec/runner_spec.rb
bio-velvet_underground-0.1.0	spec/runner_spec.rb