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Contents
require 'helper_spec'
require 'rpipe'
describe "Integration Processing for Johnson.Tbi.Longitudinal.Snod" do
before(:all) do
@driver_file = File.join(File.dirname(__FILE__), '..', 'drivers', 'tbi000.yml')
@pipe = RPipe.new(@driver_file)
@driver = @pipe.workflow_spec
@completed_orig_directory = File.join($MRI_DATA, 'integration', 'tbi000_orig')
@completed_proc_directory = File.join($MRI_DATA, 'integration', 'tbi000_proc')
@completed_stats_directory = File.join($MRI_DATA, 'integration', 'tbi000_stats')
end
it "should reconstruct raw data" do
pipe = RPipe.new(@driver)
# pipe.recon_jobs.first.perform
pipe.recon_jobs.each do |recon_job|
recon_job.perform
end
# Use instance variables to pass on local directories to subsequent tests if this one was successful.
@origdir = @driver['origdir'] if Dir.compare_directories(@driver['origdir'], @completed_orig_directory)
end
it "should preprocess reconstructed data" do
# Realignment alters the headers of images during Estimate, so you must
# use a local copy that hasn't been run before for correct results.
@driver['origdir'] = @origdir || Pathname.new(@completed_orig_directory).recursive_local_copy
pipe = RPipe.new(@driver)
p = pipe.preproc_jobs.first
p.perform
@procdir = @driver['procdir'] if Dir.compare_directories(@driver['procdir'], @completed_proc_directory)
end
it "should run stats on processed data" do
@driver['procdir'] = @procdir || @completed_proc_directory
pipe = RPipe.new(@driver)
s = pipe.stats_jobs.first
s.perform
@statsdir = @driver['statsdir'] if Dir.compare_directories(File.join(@driver['statsdir'], 'v1'), @completed_stats_directory)
end
end
Version data entries
10 entries across 10 versions & 1 rubygems