module Onebox module Engine class PubmedOnebox include Engine include LayoutSupport matches_regexp Regexp.new("^https?://(?:(?:\\w)+\\.)?(www.ncbi.nlm.nih)\\.gov(?:/)?/pubmed/\\d+") private def get_xml doc = Nokogiri::XML(open(URI.join(@url, "?report=xml&format=text"))) pre = doc.xpath("//pre") Nokogiri::XML("" + pre.text + "") end def authors_of_xml(xml) initials = xml.css("Initials").map{|x| x.content} last_names = xml.css("LastName").map{|x| x.content} author_list = (initials.zip(last_names)).map{|i,l| i + " " + l} if author_list.length > 1 then author_list[-2] = author_list[-2] + " and " + author_list[-1] author_list.pop end author_list.join(", ") end def date_of_xml(xml) date_arr = (xml.css("PubDate").children).map{|x| x.content} date_arr = date_arr.select{|s| !s.match(/^\s+$/)} date_arr = (date_arr.map{|s| s.split}).flatten date_arr.sort.reverse.join(" ") # Reverse sort so month before year. end def data xml = get_xml() { title: xml.css("ArticleTitle").text, authors: authors_of_xml(xml), journal: xml.css("Title").text, abstract: xml.css("AbstractText").text, date: date_of_xml(xml), link: @url, pmid: match[:pmid] } end def match @match ||= @url.match(%r{www\.ncbi\.nlm\.nih\.gov/pubmed/(?[0-9]+)}) end end end end