Contents

#!/usr/bin/env ruby
require 'cri'

trap "INT" do
  $interupted = true
end
Signal.trap("PIPE", "EXIT")
root_cmd = Cri::Command.new_basic_root.modify do
  name 'prot2pept'
  required :p, :pattern, "cleavage pattern to split input protein (default: ([KR])([^P]))"
  run do |opts, args, cmd|
    pattern = opts.fetch(:pattern, "([KR])([^P])")
    $stdin.each_line do |prot|
      break if $interupted
      puts prot.gsub(/#{pattern}/,"\\1\n\\2").gsub(/#{pattern}/, "\\1\n\\2").split("\n").reject(&:empty?)
    end
  end
end

root_cmd.run(ARGV)

Version data entries

4 entries across 4 versions & 1 rubygems

Version	Path
unipept-0.3.2	bin/prot2pept
unipept-0.3.1	bin/prot2pept
unipept-0.3.0	bin/prot2pept
unipept-0.2.10	bin/prot2pept