Contents

require 'rspec'
require 'pp'
require 'systemu'
require 'spec_helper'

require 'kmer_abundance_pattern'


describe 'kmer_abundance_pattern' do
  it 'should parse from human' do
    pat = KmerAbundancePattern.new
    pat.length.should eq(0)

    pat.parse_from_human '0111'
    pat.should eq([false, true, true, true])

    pat.parse_from_human '101'
    pat.should eq([true, false, true])
  end

  it 'should same_as?' do
    pat = KmerAbundancePattern.new
    exp = KmerAbundancePattern.new
    pat.parse_from_human '101'

    exp.parse_from_human '101'
    pat.same_as?(exp).should eq(true)

    exp.parse_from_human '111'
    pat.same_as?(exp).should eq(false)

    exp.parse_from_human '110'
    pat.same_as?(exp).should eq(false)
  end

  it 'should consistent_with?' do
    pat = KmerAbundancePattern.new
    exp = KmerAbundancePattern.new
    pat.parse_from_human '101'

    exp.parse_from_human '101'
    pat.consistent_with?(exp).should eq(true)

    exp.parse_from_human '111'
    pat.consistent_with?(exp).should eq(true)

    exp.parse_from_human '110'
    pat.consistent_with?(exp).should eq(false)

    exp.parse_from_human '11-'
    pat.consistent_with?(exp).should eq(true)

    exp.parse_from_human '1-0'
    pat.consistent_with?(exp).should eq(false)
  end
end

Version data entries

8 entries across 8 versions & 1 rubygems

Version	Path
finishm-0.0.9	spec/kmer_abundance_pattern_spec.rb
finishm-0.0.8	spec/kmer_abundance_pattern_spec.rb
finishm-0.0.7	spec/kmer_abundance_pattern_spec.rb
finishm-0.0.6	spec/kmer_abundance_pattern_spec.rb
finishm-0.0.5	spec/kmer_abundance_pattern_spec.rb
finishm-0.0.4	spec/kmer_abundance_pattern_spec.rb
finishm-0.0.2	spec/kmer_abundance_pattern_spec.rb
finishm-0.0.1	spec/kmer_abundance_pattern_spec.rb