Contents

require File.join(File.dirname(__FILE__),'../lib/rake_helper')

define_source_tasks "protein_protein" => "http://string-db.org/newstring_download/protein.links.v9.0.txt.gz"

process_tsv :protein_protein, 'protein_protein', :grep => '9606\.ENSP', :fix => lambda{|l| l.gsub(/9606\./,'')}, :merge => true, :sep => "\s" do 
  headers ['Ensembl Protein ID', 'Interactor Ensembl Protein ID', 'Score']
end

Version data entries

4 entries across 4 versions & 1 rubygems

Version	Path
rbbt-phgx-2.1.1	share/install/STRING/Rakefile
rbbt-phgx-2.1.0	share/install/STRING/Rakefile
rbbt-phgx-2.0.1	share/install/STRING/Rakefile
rbbt-phgx-2.0.0	share/install/STRING/Rakefile