Sha256: 776aee94a5e4a3a571933261288f14b8a49f60b4ffc1e09f12d60c04a8d85081
Contents?: true
Size: 980 Bytes
Versions: 7
Compression:
Stored size: 980 Bytes
Contents
require 'slim'
# Top level module / namespace.
module NpSearch
# Class that generates the output
class Output
class << self
def to_html(input_file)
templates_path = File.expand_path(File.join(__FILE__, '../../../',
'templates/contents.slim'))
contents_temp = File.read(templates_path)
h_content = Slim::Template.new { contents_temp }.render(NpSearch)
File.open("#{input_file}.npsearch.html", 'w') { |f| f.puts h_content }
end
def to_fasta(input_file, sorted_sequences, input_type)
File.open("#{input_file}.npsearch.fa", 'w') do |f|
sorted_sequences.each do |s|
if input_type == :protein
f.puts ">#{s.defline}\n#{s.signalp}#{s.seq}"
elsif input_type == :genetic
f.puts ">#{s.defline}"
f.puts "#{s.signalp}#{s.seq}"
end
end
end
end
end
end
end
Version data entries
7 entries across 7 versions & 1 rubygems