Sha256: 76ec3776220a9abc685792e187ae7a6edd529c00b0fe2a203d4603eafbd1e61c
Contents?: true
Size: 483 Bytes
Versions: 15
Compression:
Stored size: 483 Bytes
Contents
#!/bin/bash
# for now, we use the Caporaso reference OTUs
# In the future, I would like to be able to generate a fresh
# OTU reference database from scratch.
REF_DB='http://greengenes.lbl.gov/Download/Sequence_Data/Fasta_data_files/Reference_OTUs_for_Pipelines/Caporaso_Reference_OTUs/gg_otus_4feb2011.tgz'
default: reference_otus
reference_otus:
mkdir -p data
curl -L ${REF_DB} > data/ref_otus.tar.gz
tar -zxvf data/ref_otus.tar.gz # this will end up in some other directory
Version data entries
15 entries across 15 versions & 1 rubygems