Sha256: 74bdd95f94381f6dd5f74570415f6b88ac2771c77d8975c14aaee0d2ecf0d8cd
Contents?: true
Size: 957 Bytes
Versions: 10
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Stored size: 957 Bytes
Contents
require 'generators/job_generator'
########################################################################################################################
# A class for parsing a data directory and creating a default Preprocessing Job
# Intialize a PreprocJobGenerator with a config hash including the following optional keys:
#
# - scans : A hash of scans upon which to base preprocessing.
# Used to extract the correct bold reps for SPM.
# See #ReconJobGenerator for options for the scans hash.
#
class PreprocJobGenerator < JobGenerator
def initialize(config = {})
config_defaults = {}
super config_defaults.merge(config)
@spec['step'] = 'preprocess'
config_requires 'scans'
end
# Build a job spec and return it.
def build
bold_reps = []
@spec['bold_reps'] = @config['scans'].collect do |scan|
scan['bold_reps'] - scan['volumes_to_skip']
end
return @spec
end
end
Version data entries
10 entries across 10 versions & 1 rubygems