Contents

%h1= entity
= entity.transcript.gene.link

.svg(style="width:100%")
  = entity.marked_svg

%dl
  %dt MutationAssesor prediction
  %dd= entity.damage_scores([:mutation_assessor])

  %dt SIFT prediction
  %dd= entity.damage_scores([:sift])


 
- pdbs = entity.pdbs
- if pdbs and pdbs.any?
  #jmol
    %hr
    %select.pdb
      %option(selected="selected") Select a pdb
      - pdbs.each do |pdb, info| 
        - pdb_chain = info[:chains].split("/").first
        - pdb_position = entity.position - info[:region].begin + 1
        %option(attr-chain=pdb_chain attr-position=pdb_position attr-pdb=pdb)= "#{ pdb} (#{[pdb_position, pdb_chain] * "/"})"
    
    #jmol_image

    :javascript

      jmolSetXHTML('jmol_image')

      jmolApplet(500, "", "PIZARRA");
      $('select.pdb').change(function(){
        var option = $(this).find('option:selected');
        var pdb = option.attr('attr-pdb');
        if (pdb == "Select a pdb") return false
        var pdb_position = option.attr('attr-position');
        var pdb_chain = option.attr('attr-chain');
        jmolScript("load =" + pdb + "; wireframe off; restrict water; select protein; backbone off; color pink;cartoons on;color structure; select protein and *.CA and " + pdb_position + ":" + pdb_chain + "; spacefill; color blue;", "PIZARRA");
      })

Version data entries

1 entries across 1 versions & 1 rubygems

Version	Path
rbbt-views-1.0.0	share/views/entity/MutatedIsoform.haml