Contents

require 'genomer'

class GenomerPluginView::Gff < Genomer::Plugin

  DEFAULT = '.'

  def run
    options = GenomerPluginView.convert_command_line_flags(flags)
    annotations(options).
      map{|i| i.seqname = options[:identifier] || DEFAULT; i}.
      map(&:to_s).
      map(&:strip).
      unshift("##gff-version 3").
      join("\n") + "\n"
  end

end

Version data entries

6 entries across 6 versions & 1 rubygems

Version	Path
genomer-plugin-view-0.1.0	lib/genomer-plugin-view/gff.rb
genomer-plugin-view-0.0.7	lib/genomer-plugin-view/gff.rb
genomer-plugin-view-0.0.6	lib/genomer-plugin-view/gff.rb
genomer-plugin-view-0.0.5	lib/genomer-plugin-view/gff.rb
genomer-plugin-view-0.0.4	lib/genomer-plugin-view/gff.rb
genomer-plugin-view-0.0.3	lib/genomer-plugin-view/gff.rb