{%- if include.tag %}
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | where:"related_pages", include.tag | sort_natural: "name" %}
{%- else %}
{%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %}
{%- endif %}
{%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %}
{%- unless country_pages.size == 0  %}
{%- assign tool_matches_total = 0 %}
{%- assign query = "related_pages." | append: page.type %}
{%- for country_page in country_pages %}
{%- if include.tag %}
{%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
{%- unless tool_matches.size == 0  %}
{%- assign tool_matches_total = tool_matches_total | plus: tool_matches.size %}
{%- endunless %}
{%- else %}
{%- assign tool_matches_total = tool_matches_total | plus: country_page.national_resources.size %}
{%- endif %}
{%- endfor %}
{%- endunless %}
{%- unless tools.size == 0  and tool_matches_total.size == 0 %}
{%- if include.tag %}
<a class="visually-hidden-focusable" href='#skip-tool-table'>Skip tool table</a>
{%- if site.theme_variables.headings.resource-table-all-collapse %}
<a data-bs-toggle="collapse" href="#tools_collapse" role="button" aria-expanded="false" aria-controls="tools_collapse" class="d-flex align-items-baseline pb-3 border-top info-collapse">
{%- endif %}
{% if site.theme_variables.headings.resource-table-all-collapse %}<h3 class="mb-0 mt-3 flex-grow-1 text-dark">{% else %}<h2 class="h2-like fs-2">{% endif %}{{site.theme_variables.headings.resource-table-all | default: 'Tools and resources on this page' }}{% if site.theme_variables.headings.resource-table-all-collapse %}</h3>{% else % %}</h2>{% endif %}
{%- if site.theme_variables.headings.resource-table-all-collapse %}
    <i class="fa-solid fa-chevron-down fs-5"></i>
</a>
<div class="collapse info-card" id="tools_collapse">
{%- endif %}
{%- endif %}
{%- unless tools.size == 0 %}
<div class="table-responsive mt-4">
    <table class="tooltable table display">
        <thead>
            <tr class="text-nowrap">
                <th>Tool or resource
                </th>
                <th>Description</th>
                <th>Related pages</th>
                <th>Registry {%- if include.tag -%}
                    <a data-bs-toggle="tooltip" data-bs-original-title="Links to related information in ELIXIR registries: related policies and standards in FAIRsharing, scientific and technical descriptions of the resource in bio.tools, and related training in TeSS.">
                        <i class="fa-solid fa-info-circle"></i>
                    </a>{%- endif %}
                </th>
            </tr>
        </thead>
        <tbody>
            {%- for tool in tools %}
            <tr>
                {%- assign instances_tool = 0 %}
                {%- assign query = "related_pages." | append: page.type %}
                {%- for country_page in country_pages %}
                {%- assign instance_matches = country_page.national_resources | where: "instance_of", tool.id | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %}
                {%- unless instance_matches.size == 0 %}
                {%- assign instances_tool = instances_tool | plus: instance_matches.size %}
                {%- endunless %}
                {%- endfor %}
                {% if tool.url %}
                <td><a href="{{tool.url}}">{{tool.name}}</a></td>
                {%- else %}
                <td>{{tool.name}}</td>
                {%- endif %}
                <td>{{tool.description}}
                    {%- if tool.instance_of or tool.how_to_access or instances_tool != 0 != 0 and include.tag != nil %}
                    {%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
                    <div class="d-block mt-1">
                        {%- if linked_tool %}
                        <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
                        {%- endif %}
                        {%- if tool.how_to_access %}
                        <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
                        {%- endif %}
                        {%- unless instances_tool == 0 or include.tag == nil %}
                        <!-- <a href="#national-resources-button">
                        <span class="badge text-white bg-primary"><i class="fa-solid fa-arrow-circle-down me-2"></i>Different instances available</span>
                    </a> -->
                        {%- endunless %}
                    </div>
                    {%- endif %}
                </td>
                {%- capture related_pages %}
                {%- for tag in tool.related_pages %}
                {%- unless tag == page.page_id %}
                {%- assign related_page = site.pages | where:"page_id",tag | first %}
                <a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize }}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
                {%- endunless %}
                {%- endfor %}
                {%- endcapture %}
                <td>{{related_pages}}</td>
                <td>
                    {%- if tool.registry.biotools and tool.registry.biotools != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-info me-2"></i>Tool info</span></a>
                    {%- endif %}
                    {%- if tool.registry.fairsharing and tool.registry.fairsharing != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
                    {%- endif %}
                    {%- if tool.registry.fairsharing-coll and tool.registry.fairsharing-coll != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
                    {%- endif %}
                    {%- if tool.registry.tess and tool.registry.tess != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
                    {%- endif %}
                    {%- if tool.registry.europmc and tool.registry.europmc != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
                    {%- endif %}
                </td>
            </tr>
            {%- endfor %}
{%- if tool_matches_total == 0 or include.tag %}
        </tbody>
    </table>
</div>
{%- endif %}
{%- if include.tag %}
{%- if site.theme_variables.headings.resource-table-all-collapse %}
</div>
{%- endif %}
<div id="skip-tool-table"></div>
{%- endif %}

{%- endunless %}
{%- unless tool_matches_total == 0 %}
{%- if include.tag %}
<a class="visually-hidden-focusable" href='#skip-nat-tool-table'>Skip national tools table</a>
{%- if site.theme_variables.headings.resource-table-all-collapse %}
<a data-bs-toggle="collapse" href="#nat_tools_collapse" role="button" aria-expanded="false" aria-controls="nat_tools_collapse" class="d-flex align-items-baseline pb-3 border-top info-collapse">
{%- endif %}
    <h3 class="{% if site.theme_variables.headings.resource-table-all-collapse %}mb-0 mt-3 flex-grow-1 text-dark {% endif %}">National resources</h3>
{%- if site.theme_variables.headings.resource-table-all-collapse %}
    <i class="fa-solid fa-chevron-down fs-5"></i>
</a>
<div class="collapse info-card" id="nat_tools_collapse">
{%- endif %}
<p class="mt-4">Tools and resources tailored to users in different countries.</p>
<div class="table-responsive mt-3">
    <table class="tooltable table display">
        <thead>
            <tr class="text-nowrap">
                <th>Tool or resource
                    <a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry. In most cases you will only find back the tools or resources that are mentioned in this page.">
                        <i class="fa-solid fa-info-circle"></i>
                    </a>
                </th>
                <th>Description</th>
                <th>Related pages</th>
                <th>Registry
                    <a data-bs-toggle="tooltip" data-bs-original-title="Links to related information in ELIXIR registries: related policies and standards in FAIRsharing, scientific and technical descriptions of the resource in bio.tools, and related training in TeSS.">
                        <i class="fa-solid fa-info-circle"></i>
                    </a>
                </th>
            </tr>
        </thead>
        <tbody>
{%- endif %}
            {%- for country_page in country_pages %}
            {%- if include.tag %}
            {%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag | sort_natural: "name" %}
            {%- else %}
            {%- assign tool_matches = country_page.national_resources %}
            {%- endif %}
            {%- for tool in tool_matches %}
            <tr>
                {% if tool.url %}
                <td><a href="{{tool.url}}">{{tool.name}}</a><a href="{{country_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{country_page.title}}"><span class="flag-icon ms-2 shadow-sm flag-icon-{{country_page.country_code | downcase }}"></span></a></td>
                {%- else %}
                <td>{{tool.name}}<a href="{{country_page.url}}"><span class="flag-icon ms-2 shadow-sm flag-icon-{{country_page.country_code | downcase }}"></span></a></td>
                {%- endif %}
                <td>{{tool.description | markdownify }}
                    {%- if tool.instance_of or tool.how_to_access %}
                    {%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %}
                    <div class="d-block mt-1">
                        {%- if linked_tool %}
                        <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span>
                        {%- endif %}
                        {%- if tool.how_to_access %}
                        <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span>
                        {%- endif %}
                    </div>
                    {%- endif %}
                </td>
                {%- if tool.related_pages %}
                {%- capture related_pages %}
                {%- for section in tool.related_pages %}
                {%- unless section[1].size == 0 %}
                {%- for tag in section[1] %}
                {%- unless tag == page.page_id %}
                {%- assign related_page = site.pages | where:"page_id",tag | first %}
                <a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize }}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a>
                {%- endunless %}
                {%- endfor %}
                {%- endunless %}
                {%- endfor %}
                {%- endcapture %}
                <td>{{related_pages}}</td>
                {%- else %}
                <td></td>
                {%- endif %}
                <td>
                    {%- if tool.registry.biotools and tool.registry.biotools != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-info me-2"></i>Tool info</span></a>
                    {%- endif %}
                    {%- if tool.registry.fairsharing and tool.registry.fairsharing != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
                    {%- endif %}
                    {%- if tool.registry.fairsharing-coll and tool.registry.fairsharing-coll != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a>
                    {%- endif %}
                    {%- if tool.registry.tess and tool.registry.tess != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a>
                    {%- endif %}
                    {%- if tool.registry.europmc and tool.registry.europmc != "NA" %}
                    <a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a>
                    {%- endif %}
                </td>
            </tr>
            {%- endfor %}
            {%- endfor %}
        </tbody>
    </table>
</div>
{%- if include.tag %}
{%- if site.theme_variables.headings.resource-table-all-collapse %}
</div>
{%- endif %}
<div id="skip-nat-tool-table"></div>
{%- endif %}
{%- endunless %}
{%- endunless %}