Class: BlastRFValidationOutput

Inherits:

ValidationReport

• Object
• ValidationReport
• BlastRFValidationOutput

show all

Defined in:

lib/genevalidator/validation_blast_reading_frame.rb

Overview

Instance Attribute Summary (collapse)

• - (Object) frames_histo readonly

  Returns the value of attribute frames_histo.

• - (Object) msg readonly

  Returns the value of attribute msg.

Attributes inherited from ValidationReport

#bg_color, #errors, #expected, #message, #plot_files, #result, #validation_result

Instance Method Summary (collapse)

• - (BlastRFValidationOutput) initialize(frames_histo, expected = :yes) constructor

  A new instance of BlastRFValidationOutput.

• - (Object) print
• - (Object) validation

Methods inherited from ValidationReport

#color

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# File 'lib/genevalidator/validation_blast_reading_frame.rb', line 10

def initialize (frames_histo, expected = :yes)
  @frames_histo = frames_histo
  @msg = ""
  frames_histo.each do |x, y|
    @msg << "#{x}:#{y}; "      
  end
  @expected = expected
  @result = validation
end

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# File 'lib/genevalidator/validation_blast_reading_frame.rb', line 7

def frames_histo
  @frames_histo
end

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# File 'lib/genevalidator/validation_blast_reading_frame.rb', line 8

def msg
  @msg
end

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# File 'lib/genevalidator/validation_blast_reading_frame.rb', line 20

def print
  @msg
end

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# File 'lib/genevalidator/validation_blast_reading_frame.rb', line 24

def validation
  # if there are different reading frames of the same sign
  # count for positive reading frames
  count_p = 0
  count_n = 0
  frames_histo.each do |x, y|
    if x > 0
      count_p += 1
    else
      if x < 0
        count_n += 1
      end
    end
  end

  if count_p > 1 or count_n > 1
    :no
  else
    :yes
  end

end