--- !ruby/object:Gem::Specification name: jandot-bio version: !ruby/object:Gem::Version version: 1.2.1 platform: ruby authors: - Jan Aerts autorequire: bio bindir: bin cert_chain: [] date: 2008-06-13 00:00:00 -07:00 default_executable: bioruby dependencies: [] description: BioRuby is a library for bioinformatics (biology + information science). email: jandot@bioruby.org executables: - bioruby - br_biofetch.rb - br_biogetseq.rb - br_bioflat.rb - br_pmfetch.rb extensions: [] extra_rdoc_files: [] files: - bin/br_pmfetch.rb - bin/br_biogetseq.rb - bin/br_bioflat.rb - bin/br_biofetch.rb - bin/bioruby - doc/Tutorial.rd.ja - doc/KEGG_API.rd.ja - doc/Tutorial.rd - doc/KEGG_API.rd - doc/Changes-0.7.rd - etc/bioinformatics - etc/bioinformatics/seqdatabase.ini - lib/bio - lib/bio/db - lib/bio/db/pdb - lib/bio/db/pdb/residue.rb - lib/bio/db/pdb/chain.rb - lib/bio/db/pdb/model.rb - lib/bio/db/pdb/pdb.rb - lib/bio/db/pdb/chemicalcomponent.rb - lib/bio/db/pdb/atom.rb - lib/bio/db/pdb/utils.rb - lib/bio/db/embl - lib/bio/db/embl/uniprot.rb - lib/bio/db/embl/common.rb - lib/bio/db/embl/embl.rb - lib/bio/db/embl/sptr.rb - lib/bio/db/embl/trembl.rb - lib/bio/db/embl/swissprot.rb - lib/bio/db/kegg - lib/bio/db/kegg/kgml.rb - lib/bio/db/kegg/compound.rb - lib/bio/db/kegg/drug.rb - lib/bio/db/kegg/glycan.rb - lib/bio/db/kegg/brite.rb - lib/bio/db/kegg/genes.rb - lib/bio/db/kegg/expression.rb - lib/bio/db/kegg/reaction.rb - lib/bio/db/kegg/taxonomy.rb - lib/bio/db/kegg/genome.rb - lib/bio/db/kegg/orthology.rb - lib/bio/db/kegg/enzyme.rb - lib/bio/db/kegg/keggtab.rb - lib/bio/db/lasergene.rb - lib/bio/db/prosite.rb - lib/bio/db/litdb.rb - lib/bio/db/rebase.rb - lib/bio/db/aaindex.rb - lib/bio/db/go.rb - lib/bio/db/medline.rb - lib/bio/db/fasta.rb - lib/bio/db/soft.rb - lib/bio/db/nbrf.rb - lib/bio/db/genbank - lib/bio/db/genbank/ddbj.rb - lib/bio/db/genbank/genbank.rb - lib/bio/db/genbank/genpept.rb - lib/bio/db/genbank/common.rb - lib/bio/db/genbank/refseq.rb - lib/bio/db/gff.rb - lib/bio/db/pdb.rb - lib/bio/db/transfac.rb - lib/bio/db/nexus.rb - lib/bio/db/fantom.rb - lib/bio/db/newick.rb - lib/bio/io - lib/bio/io/ddbjxml.rb - lib/bio/io/ncbirest.rb - lib/bio/io/dbget.rb - lib/bio/io/soapwsdl.rb - lib/bio/io/ncbisoap.rb - lib/bio/io/ensembl.rb - lib/bio/io/das.rb - lib/bio/io/higet.rb - lib/bio/io/ebisoap.rb - lib/bio/io/registry.rb - lib/bio/io/fastacmd.rb - lib/bio/io/keggapi.rb - lib/bio/io/sql.rb - lib/bio/io/flatfile - lib/bio/io/flatfile/indexer.rb - lib/bio/io/flatfile/bdb.rb - lib/bio/io/flatfile/index.rb - lib/bio/io/hinv.rb - lib/bio/io/pubmed.rb - lib/bio/io/flatfile.rb - lib/bio/io/fetch.rb - lib/bio/appl - lib/bio/appl/gcg - lib/bio/appl/gcg/msf.rb - lib/bio/appl/gcg/seq.rb - lib/bio/appl/pts1.rb - lib/bio/appl/blat - lib/bio/appl/blat/report.rb - lib/bio/appl/sim4 - lib/bio/appl/sim4/report.rb - lib/bio/appl/blast - lib/bio/appl/blast/rexml.rb - lib/bio/appl/blast/report.rb - lib/bio/appl/blast/format0.rb - lib/bio/appl/blast/format8.rb - lib/bio/appl/blast/wublast.rb - 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test/unit/bio/test_sequence.rb - test/unit/bio/test_reference.rb - test/unit/bio/shell - test/unit/bio/shell/plugin - test/unit/bio/shell/plugin/test_seq.rb - test/unit/bio/test_alignment.rb - test/unit/bio/test_tree.rb - test/unit/bio/test_location.rb - test/unit/bio/test_map.rb - test/unit/bio/sequence - test/unit/bio/sequence/test_aa.rb - test/unit/bio/sequence/test_na.rb - test/unit/bio/sequence/test_common.rb - test/unit/bio/sequence/test_compat.rb - test/unit/bio/test_command.rb - test/unit/bio/test_shell.rb - test/functional - test/functional/bio - test/functional/bio/io - test/functional/bio/io/test_soapwsdl.rb - test/functional/bio/io/test_ensembl.rb - test/runner.rb has_rdoc: true homepage: http://github.com/jandot/bioruby post_install_message: rdoc_options: [] require_paths: - lib required_ruby_version: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: "0" version: required_rubygems_version: !ruby/object:Gem::Requirement requirements: - - ">=" - !ruby/object:Gem::Version version: "0" version: requirements: [] rubyforge_project: bioruby rubygems_version: 1.2.0 signing_key: specification_version: 2 summary: Jandot's clone of bioruby, a bioinformatics library test_files: []