Sha256: 6a9761f5e6c8e4743caa45824553752ad87c004f389204add0cc72e1d6cc12f7
Contents?: true
Size: 821 Bytes
Versions: 1
Compression:
Stored size: 821 Bytes
Contents
module BioVcf class VcfNucleotides def initialize list @list = list end def [] idx idx = ["A","C","G","T"].index(idx) if idx.kind_of?(String) return 0 if idx == nil @list[idx].to_i end end class VcfGenotypeField def initialize s, format, header @values = s.split(/:/) @format = format @header = header end def bcount VcfNucleotides.new(@values[@format['BCOUNT']].split(',')) end def bq VcfNucleotides.new(@values[@format['BQ']].split(',')) end def amq VcfNucleotides.new(@values[@format['AMQ']].split(',')) end def method_missing(m, *args, &block) v = @values[@format[m.to_s.upcase]] v = v.to_i if v =~ /^\d+$/ v = v.to_f if v =~ /^\d+\.\d+$/ v end end end
Version data entries
1 entries across 1 versions & 1 rubygems
Version | Path |
---|---|
bio-vcf-0.0.1 | lib/bio-vcf/vcfgenotypefield.rb |