Sha256: 68efe29686d3560c95a00043d3dc899d9b7378c835da523e89f4a3040168c9c2
Contents?: true
Size: 1.23 KB
Versions: 211
Compression:
Stored size: 1.23 KB
Contents
- index = knowledge_base.get_index database
- kb_name = File.basename pair.knowledge_base.dir
- if index.include? pair
- fields = index.fields
- values = index[pair]
- if fields.any?
- tsv = TSV.setup({}, :key_field => "Num", :fields => fields, :type => :list)
- values.zip(fields).uniq.each_with_index do |p,i|
- value, field = p
- value.split(";;").each_with_index do |part,j|
- tsv[j] ||= [nil] * fields.length
- tsv[j][i] = part
- tsv.entity_options = knowledge_base.entity_options
- tsv.namespace = knowledge_base.namespace
- if tsv.fields.include? "PMID"
- tsv.add_field "Title" do |k,v|
- v["PMID"].title
- if tsv.fields.include? "Publication"
- tsv.add_field "Title" do |k,v|
- PMID.setup(v["Publication"]).title if v["Publication"] =~ /^\d+$/
- if tsv.fields.include? "Method"
- tsv.add_field "Evidence" do |k,v|
- PSI_MITerm.setup(v["Method"]).name if v["Method"] =~ /^MI:\d+$/
-#= tsv2html(tsv, :table_id => "#{pair} in #{database} #{kb_name}")
= association_table tsv, :table_id => "#{pair} in #{database} #{kb_name}"
- else
No information for #{pair} in #{database}
- else
Pair #{pair} not registered in #{ database }
Version data entries
211 entries across 211 versions & 1 rubygems