Contents

Log File=paup.log Replace=Yes;
Set Monitor=no;
Set Criterion=parsimony;
Set Root=midpoint;
Set SemiGraph=yes;
Set StoreBrLens=yes;
Set Autoclose=yes;
PSet Opt=MINF;
PSet StepMatrix=ObsOnly;
PSet GapMode=missing;
HSearch AddSeq=Random ReconLimit=Infinity;
SortTrees;
RootTrees rootMethod=midpoint;
PSet Opt=ACCTran;
ConTree / strict=no majrule=yes rootMethod=midpoint saveSupport=both treefile=con.tree replace=yes;
DescribeTrees ALL / plot=phylogram rootMethod=midpoint brLens=yes labelNode=yes
                chgList=yes taxLabels=full showTaxNum=yes;
Factory;

Version data entries

1 entries across 1 versions & 1 rubygems

Version	Path
dphil-0.1.4	vendor/default_commands.paup