--- !ruby/object:Gem::Specification name: bio-gngm version: !ruby/object:Gem::Version version: 0.2.1 prerelease: platform: ruby authors: - Dan MacLean autorequire: bindir: bin cert_chain: [] date: 2012-12-06 00:00:00.000000000 Z dependencies: - !ruby/object:Gem::Dependency name: bio requirement: &70260854174020 !ruby/object:Gem::Requirement none: false requirements: - - ! '>=' - !ruby/object:Gem::Version version: 1.4.2 type: :runtime prerelease: false version_requirements: *70260854174020 - !ruby/object:Gem::Dependency name: bio-samtools requirement: &70260854172940 !ruby/object:Gem::Requirement none: false requirements: - - ! '>=' - !ruby/object:Gem::Version version: 0.5.0 type: :runtime prerelease: false version_requirements: *70260854172940 - !ruby/object:Gem::Dependency name: rinruby requirement: &70260854172180 !ruby/object:Gem::Requirement none: false requirements: - - ! 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'>=' - !ruby/object:Gem::Version version: '0' type: :development prerelease: false version_requirements: *70260854152960 description: Identify causative mutations in a model genome from NGS reads using the NGM method. email: maclean.daniel@gmail.com executables: [] extensions: [] extra_rdoc_files: - LICENSE.txt - README.rdoc files: - .document - Gemfile - Gemfile.lock - LICENSE.txt - README.rdoc - Rakefile - VERSION - bio-gngm.gemspec - doc/Bio.html - doc/Bio/DB.html - doc/Bio/DB/FastaLengthDB.html - doc/Bio/DB/Pileup.html - doc/Bio/DB/Vcf.html - doc/Bio/Util.html - doc/Bio/Util/Gngm.html - doc/LICENSE_txt.html - doc/_index.html - doc/class_list.html - doc/created.rid - doc/css/common.css - doc/css/full_list.css - doc/css/style.css - doc/doc/created.rid - doc/file_list.html - doc/frames.html - doc/images/add.png - doc/images/bands.png - doc/images/brick.png - doc/images/brick_link.png - doc/images/bug.png - doc/images/bullet_black.png - doc/images/bullet_toggle_minus.png - doc/images/bullet_toggle_plus.png - doc/images/date.png - doc/images/delete.png - doc/images/find.png - doc/images/loadingAnimation.gif - doc/images/macFFBgHack.png - doc/images/package.png - doc/images/page_green.png - doc/images/page_white_text.png - doc/images/page_white_width.png - doc/images/plugin.png - doc/images/ruby.png - doc/images/signal.png - doc/images/tag_blue.png - doc/images/tag_green.png - doc/images/threads.png - doc/images/transparent.png - doc/images/wrench.png - doc/images/wrench_orange.png - doc/images/zoom.png - doc/index.html - doc/js/app.js - doc/js/darkfish.js - doc/js/full_list.js - doc/js/jquery.js - doc/js/navigation.js - doc/js/search.js - doc/js/search_index.js - doc/js/searcher.js - doc/lib/bio-gngm_rb.html - doc/lib/bio/util/bio-gngm_rb.html - doc/method_list.html - doc/rdoc.css - doc/table_of_contents.html - examples/.DS_Store - examples/Chr1.html - examples/gngm_qtl_mapping_HTML_maker_set_options.rb - examples/make_histograms.rb - examples/make_threads.rb - examples/make_threads_isize.rb - examples/pileup.txt - examples/snps.vcf - examples/use_indels.rb - lib/bio-gngm.rb - lib/bio/util/bio-gngm.rb - scripts/get_subseq.rb - scripts/make_histograms_laerfyve.rb - scripts/make_histograms_laerfyve_stitched.rb - scripts/make_threads_isize_laerfyfe.rb - scripts/make_threads_unmapped_laerfyfe.rb - scripts/make_threads_unmapped_laerfyfe_pseudo.rb - scripts/make_threads_unmapped_simulation.rb - scripts/make_threads_unmapped_simulation_immediate_region.rb - scripts/optimise_freq_window_size.rb - stitched_contigs.zip - test/data/ids2.txt - test/data/sorted.bam - test/data/test - test/data/test.bam - test/data/test.fa - test/data/test.fai - test/data/test.sai - test/data/test.tam - test/data/test_chr.fasta - test/data/test_chr.fasta.amb - test/data/test_chr.fasta.ann - test/data/test_chr.fasta.bwt - test/data/test_chr.fasta.fai - test/data/test_chr.fasta.pac - test/data/test_chr.fasta.rbwt - test/data/test_chr.fasta.rpac - test/data/test_chr.fasta.rsa - test/data/test_chr.fasta.sa - test/data/testu.bam - test/data/testu.bam.bai - test/helper.rb - test/test_bio-gngm.rb homepage: http://github.com/danmaclean/bioruby-gngm licenses: - MIT post_install_message: rdoc_options: [] require_paths: - lib required_ruby_version: !ruby/object:Gem::Requirement none: false requirements: - - ! 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