Sha256: 680b8ad232a472505332560c22722892959e9488b633d7fec99f10240beb4978
Contents?: true
Size: 802 Bytes
Versions: 23
Compression:
Stored size: 802 Bytes
Contents
# Sample1: parse, traverse, manipulate, and build BioC data
require 'simple_bioc'
# parse BioC file
collection = SimpleBioC.from_xml("../xml/everything.xml")
# the returned object contains all the information in the BioC file
# traverse & read information
collection.documents.each do |document|
puts document
document.passages.each do |passage|
puts passage
end
end
# manipulate
doc = SimpleBioC::Document.new(collection)
doc.id = "23071747"
doc.infons["journal"] = "PLoS One"
collection.documents << doc
p = SimpleBioC::Passage.new(doc)
p.offset = 0
p.text = "TRIP database 2.0: a manually curated information hub for accessing TRP channel interaction network."
p.infons["type"] = "title"
doc.passages << p
# build BioC document from data
xml = SimpleBioC.to_xml(collection)
puts xml
Version data entries
23 entries across 23 versions & 1 rubygems