section#search
  h1.page-header
    span  GeneValidator 
    span.small  Identify problems with gene predictions
  form#input action="#{uri('/')}" method="POST"
    .form-group#input_seq_group
      label.control-label.input_seq-label for="seq"  Input Sequences:
      - if @max_characters != 'undefined'
        textarea#seq.form-control autofocus="" name="seq" placeholder="Paste your sequence(s) here..." rows="10" spellcheck="false" data-maxCharacters="#{@max_characters}"
      - else
        textarea#seq.form-control autofocus="" name="seq" placeholder="Paste your sequence(s) here..." rows="10" spellcheck="false"
    .clearfix
    .form-group
      button#input_btn.btn.btn-lg.btn-primary type="submit" value="input"
        i.fa.fa-search
        |   Analyse Sequences
      button#adv_params_btn.btn.btn-primary type="button" onclick="changeAdvParamsBtnText()"
        i.fa.fa-pencil-square-o
        |   Show Advanced Parameters
    .clearfix
    #adv_params.collapse
      .form-group.form-inline#validations_group
        br/
        label.control-label  Advanced Parameters: Validations Types
        br/
        label.checkbox-inline.no_indent.col-lg-3.col-md-5.col-sm-6.col-xs-12
          <input id="lenc" class="check" type="checkbox" name="validations[]" checked="" value="lenc">Length Validation (via clusterization)
        label.checkbox-inline.no_indent.col-lg-3.col-md-5.col-sm-6.col-xs-12
          <input id="lenr" class="check" type="checkbox" name="validations[]" checked="" value="lenr"> Length Validation (via ranking)
        label.checkbox-inline.no_indent.col-lg-3.col-md-5.col-sm-6.col-xs-12
          <input id="dup" class="check" type="checkbox" name="validations[]" checked="" value="dup"> Duplication Check
        label.checkbox-inline.no_indent.col-lg-3.col-md-5.col-sm-6.col-xs-12
          <input id="merge" class="check" type="checkbox" name="validations[]" checked="" value="merge"> Gene Merge Validation
        label.checkbox-inline.no_indent.col-lg-3.col-md-5.col-sm-6.col-xs-12
          <input id="align" class="check" type="checkbox" name="validations[]" checked="" value="align"> Multiple Alignment Validation (proteins)
        label.checkbox-inline.no_indent.col-lg-3.col-md-5.col-sm-6.col-xs-12
          <input id="frame" class="check" type="checkbox" name="validations[]" checked="" value="frame"> Blast Reading Frame Validation (nucleotides)
        label#lastValidation.checkbox-inline.no_indent.col-lg-3.col-md-5.col-sm-6.col-xs-12
          <input id="orf" class="check" type="checkbox" name="validations[]" checked="" value="orf"> Open Reading Frame Validation (nucleotides)
      .clearfix
      br/
      .form-group.form-inline
        label.control-label  Advanced Parameters: Database
        br/
        label.radio-inline.no_indent.col-xs-12
          <input type="radio" name="database" value="#{@default_db.title.chomp}" checked=""> #{@default_db.title.chomp}
        - unless @non_default_dbs.empty?
          - @non_default_dbs.each do |db|
            label.radio-inline.no_indent.col-xs-12
              <input type="radio" name="database" value="#{db.title.chomp}"> #{db.title.chomp}
      .clearfix
    .show_examples_text
      span 
        a#protein_example onclick="examplarSequence('protein')"
          | Show a protein example
      span
        | &nbsp;&#124;&nbsp;
      span
        a#dna_example onclick="examplarSequence('dna')"
          | Show a DNA example
section#results
  #results_box style="display:none;"
    h1#output_header.page-header
      span Results
    #output