require File.join(File.dirname(__FILE__),'../lib/rake_helper')

define_source_tasks  "Homo sapiens-20110628.txt" => "http://cbg.garvan.unsw.edu.au/pina/download/Homo%20sapiens-20110628.txt"

process_tsv :protein_protein, 'Homo sapiens-20110628.txt',
  :key         => 0, 
  :fix         => lambda{|l| l.gsub("uniprotkb:", '').gsub("(gene name)",'').gsub("pubmed:",'').gsub("|", ';;').gsub(/\([^)]+\)/,'')}, 
  :fields      => [1,6,8], 
  :header_hash => "#",
  :merge       => true,
  :keep_empty  => true do 

  headers ['UniProt/SwissProt Accession', 'Interactor UniProt/SwissProt Accession', 'Method', 'PMID']
end