Sha256: 64cee665791099615443a725cd19aca4ff6f7112b583073b748763253bda427f
Contents?: true
Size: 619 Bytes
Versions: 107
Compression:
Stored size: 619 Bytes
Contents
require File.join(File.dirname(__FILE__),'../lib/rake_helper')
define_source_tasks "Homo sapiens-20110628.txt" => "http://cbg.garvan.unsw.edu.au/pina/download/Homo%20sapiens-20110628.txt"
process_tsv :protein_protein, 'Homo sapiens-20110628.txt',
:key => 0,
:fix => lambda{|l| l.gsub("uniprotkb:", '').gsub("(gene name)",'').gsub("pubmed:",'').gsub("|", ';;').gsub(/\([^)]+\)/,'')},
:fields => [1,6,8],
:header_hash => "#",
:merge => true,
:keep_empty => true do
headers ['UniProt/SwissProt Accession', 'Interactor UniProt/SwissProt Accession', 'Method', 'PMID']
end
Version data entries
107 entries across 107 versions & 2 rubygems