--- !ruby/object:Gem::Specification
name: bio-vcf
version: !ruby/object:Gem::Version
  version: 0.9.4
platform: ruby
authors:
- Pjotr Prins
autorequire: 
bindir: bin
cert_chain: []
date: 2020-12-22 00:00:00.000000000 Z
dependencies: []
description: Smart lazy multi-threaded parser for VCF format with useful filtering
  and output rewriting (JSON, RDF etc.)
email: pjotr.public01@thebird.nl
executables:
- bio-vcf
extensions: []
extra_rdoc_files:
- LICENSE.txt
- README.md
files:
- ".travis.yml"
- Gemfile
- Gemfile.lock
- LICENSE.txt
- README.md
- RELEASE_NOTES.md
- RELEASE_NOTES.md~
- Rakefile
- TAGS
- VERSION
- bin/bio-vcf
- bio-vcf.gemspec
- features/cli.feature
- features/diff_count.feature
- features/filter.feature
- features/multisample.feature
- features/sfilter.feature
- features/somaticsniper.feature
- features/step_definitions/bio-vcf_steps.rb
- features/step_definitions/cli-feature.rb
- features/step_definitions/diff_count.rb
- features/step_definitions/multisample.rb
- features/step_definitions/sfilter.rb
- features/step_definitions/somaticsniper.rb
- features/step_definitions/vcf_header.rb
- features/support/env.rb
- features/vcf_header.feature
- lib/bio-vcf.rb
- lib/bio-vcf/bedfilter.rb
- lib/bio-vcf/pcows.rb
- lib/bio-vcf/template.rb
- lib/bio-vcf/utils.rb
- lib/bio-vcf/variant.rb
- lib/bio-vcf/vcf.rb
- lib/bio-vcf/vcffile.rb
- lib/bio-vcf/vcfgenotypefield.rb
- lib/bio-vcf/vcfheader.rb
- lib/bio-vcf/vcfheader_line.rb
- lib/bio-vcf/vcfline.rb
- lib/bio-vcf/vcfrdf.rb
- lib/bio-vcf/vcfrecord.rb
- lib/bio-vcf/vcfsample.rb
- lib/bio-vcf/vcfstatistics.rb
- ragel/gen_vcfheaderline_parser.rl
- ragel/generate.sh
- template/gatk_vcf2rdf.erb
- template/vcf2json.erb
- template/vcf2json_full_header.erb
- template/vcf2json_use_meta.erb
- template/vcf2rdf.erb
- template/vcf2rdf_header.erb
- test/data/input/dbsnp.vcf
- test/data/input/empty.vcf
- test/data/input/gatk_exome.vcf
- test/data/input/gatk_wgs.vcf
- test/data/input/multisample.vcf
- test/data/input/somaticsniper.vcf
- test/data/input/test.bed
- test/data/regression/empty-stderr.new
- test/data/regression/empty.new
- test/data/regression/empty.ref
- test/data/regression/eval_once-stderr.new
- test/data/regression/eval_once.new
- test/data/regression/eval_once.ref
- test/data/regression/eval_r.info.dp-stderr.new
- test/data/regression/eval_r.info.dp.new
- test/data/regression/eval_r.info.dp.ref
- test/data/regression/ifilter_s.dp-stderr.new
- test/data/regression/ifilter_s.dp.new
- test/data/regression/ifilter_s.dp.ref
- test/data/regression/pass1-stderr.new
- test/data/regression/pass1.new
- test/data/regression/pass1.ref
- test/data/regression/r.info.dp-stderr.new
- test/data/regression/r.info.dp.new
- test/data/regression/r.info.dp.ref
- test/data/regression/rewrite.info.sample-stderr.new
- test/data/regression/rewrite.info.sample.new
- test/data/regression/rewrite.info.sample.ref
- test/data/regression/s.dp-stderr.new
- test/data/regression/s.dp.new
- test/data/regression/s.dp.ref
- test/data/regression/seval_s.dp-stderr.new
- test/data/regression/seval_s.dp.new
- test/data/regression/seval_s.dp.ref
- test/data/regression/sfilter_seval_s.dp-stderr.new
- test/data/regression/sfilter_seval_s.dp.new
- test/data/regression/sfilter_seval_s.dp.ref
- test/data/regression/thread4-stderr.new
- test/data/regression/thread4.new
- test/data/regression/thread4.ref
- test/data/regression/thread4_4-stderr.new
- test/data/regression/thread4_4.new
- test/data/regression/thread4_4.ref
- test/data/regression/thread4_4_failed_filter-stderr.new
- test/data/regression/thread4_4_failed_filter-stderr.ref
- test/data/regression/thread4_4_failed_filter.new
- test/data/regression/vcf2json_full_header-stderr.new
- test/data/regression/vcf2json_full_header.new
- test/data/regression/vcf2json_full_header.ref
- test/data/regression/vcf2json_use_meta-stderr.new
- test/data/regression/vcf2json_use_meta.new
- test/data/regression/vcf2json_use_meta.ref
- test/performance/metrics.md
- test/stress/stress_test.sh
- test/tmp/test.vcf
homepage: http://github.com/vcflib/bio-vcf
licenses:
- MIT
metadata: {}
post_install_message: 
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: 2.0.0
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubyforge_project: 
rubygems_version: 2.7.6.2
signing_key: 
specification_version: 4
summary: Fast multi-purpose multi-threaded VCF parser
test_files: []