# # test/unit/bio/test_db.rb - Unit test for Bio::DB # # Copyright (C) 2005 Mitsuteru Nakao <n@bioruby.org> # # This library is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public # License as published by the Free Software Foundation; either # version 2 of the License, or (at your option) any later version. # # This library is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # Lesser General Public License for more details. # # You should have received a copy of the GNU Lesser General Public # License along with this library; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA # # $Id: test_db.rb,v 1.2 2005/11/23 11:44:12 nakao Exp $ # require 'pathname' libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 3, 'lib')).cleanpath.to_s $:.unshift(libpath) unless $:.include?(libpath) require 'test/unit' require 'bio/db' module Bio class TestDB < Test::Unit::TestCase def setup @obj = Bio::DB.new @obj.instance_eval { @orig = {"TAG" => "TAG value1\n value2"} } end def test_open assert(Bio::DB.respond_to?(:open)) end def test_entry_id assert_raises(NotImplementedError) { @obj.entry_id } end def test_tags assert_equal(["TAG"], @obj.tags) end def test_exists assert_equal(true, @obj.exists?("TAG")) end def test_get assert_equal("TAG value1\n value2", @obj.get("TAG")) end def test_fetch assert(@obj.fetch("TAG")) assert(@obj.fetch("TAG", 1)) end end class TestNCBIDB < Test::Unit::TestCase def setup entry =<<END LOCUS locus END @obj = Bio::NCBIDB.new(entry, 10) end def test_fetch assert_equal('locus', @obj.fetch("LOCUS")) end def test_p_toptag2array end def test_p_subtag2array end def test_p_entry2hash end end # class TestKEGGDB < Test::Unit::TestCase # end class TestEMBLDB < Test::Unit::TestCase def setup @entry =<<END ID id XX CC cc1 CC cc2 END @obj = Bio::EMBLDB.new(@entry, 2) end def test_fetch assert_equal('id', @obj.fetch("ID")) assert_equal('cc1 cc2', @obj.fetch("CC")) end def test_p_entry2hash end end end