Sha256: 5fffb5db7176f06c735dc7b553fd5b395f97dc51f42b4dd9b5f043d096171658
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Versions: 9
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Contents
Feature: Join adjacent alignment blocks
After filtering out sequences
The sequence that caused two blocks to be separate may be removed
So it can be desirable to join such blocks together
Scenario: Two blocks natively in indexed access
Given indexed MAF files in "test/data"
When I query for the genomic intervals
| chrom | start | end |
| mm8.chr7 | 80082334 | 80082471 |
Then 2 blocks are obtained
And the text size of block 0 is 54
And the text size of block 1 is 156
Scenario: Two blocks joined in indexed access
Given indexed MAF files in "test/data"
When I enable the :join_blocks parser option
And I filter for only the species
| mm8 |
| rn4 |
| oryCun1 |
| hg18 |
| panTro2 |
| rheMac2 |
| canFam2 |
| loxAfr1 |
| echTel1 |
And I query for the genomic intervals
| chrom | start | end |
| mm8.chr7 | 80082334 | 80082471 |
Then 1 block is obtained
And the text size of block 0 is 210
Version data entries
9 entries across 9 versions & 1 rubygems