Contents

* Bio::Gadget

*Bio::Gadget* - Gadgets for bioinformatics

* Installation

: gem install bio-gadget

* Usage

To check all commands and the usages in this package

: bio-gadget help

Currently available commands are

- dedup :: Deduplicate fastq (via STDIN)
- demlt :: Demultiplex fastq by barcodes
- femrg :: Extract and merge first exons
- fqxz :: (Re)compression of *.fq(.gz|.bz2) files
- pead :: Find peak within each exon from wigs by a mojority vote.
- qvstat :: Statistics of quality values in *.qual file
- rgt2mtx :: Convert cuffdiff read group tracking file into tab-separated matrix
- wig5p :: Convert bam-format alignments into wig-format table
- wigchr :: Extract wiggle track on specified chromosome

* Contributing

1. Fork it
2. Create your feature branch (`git checkout -b my-new-feature`)
3. (optional) Install gems (`bundle`)
4. Add your feature
5. Commit your changes (`git commit -am 'Added some feature'`)
6. Push to the branch (`git push origin my-new-feature`)
7. Create new Pull Request

Version data entries

2 entries across 2 versions & 1 rubygems

Version	Path
bio-gadget-0.4.8	README.org
bio-gadget-0.4.7	README.org