--- !ruby/object:Gem::Specification
name: rbbt-util
version: !ruby/object:Gem::Version
  version: 5.26.71
platform: ruby
authors:
- Miguel Vazquez
autorequire: 
bindir: bin
cert_chain: []
date: 2019-09-05 00:00:00.000000000 Z
dependencies:
- !ruby/object:Gem::Dependency
  name: rake
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: progress-monitor
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: lockfile
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: spreadsheet
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: rubyXL
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: highline
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: bio-bgzf
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: term-ansicolor
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: rest-client
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: to_regexp
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: nakayoshi_fork
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
description: Utilities for handling tsv files, caches, etc
email: miguel.vazquez@cnio.es
executables:
- rbbt_query.rb
- rbbt_exec.rb
- rbbt_Rutil.rb
- rbbt
- rbbt_dangling_locks.rb
extensions: []
extra_rdoc_files:
- LICENSE
- README.rdoc
files:
- LICENSE
- README.rdoc
- bin/rbbt
- bin/rbbt_Rutil.rb
- bin/rbbt_dangling_locks.rb
- bin/rbbt_exec.rb
- bin/rbbt_query.rb
- etc/app.d/base.rb
- etc/app.d/entities.rb
- etc/app.d/finder.rb
- etc/app.d/foundation.rb
- etc/app.d/grid_system.rb
- etc/app.d/init.rb
- etc/app.d/knowledge_bases.rb
- etc/app.d/remote_workflow_tasks.rb
- etc/app.d/requires.rb
- etc/app.d/resources.rb
- etc/app.d/semaphores.rb
- etc/app.d/workflows.rb
- lib/rbbt-util.rb
- lib/rbbt.rb
- lib/rbbt/annotations.rb
- lib/rbbt/annotations/annotated_array.rb
- lib/rbbt/annotations/util.rb
- lib/rbbt/association.rb
- lib/rbbt/association/database.rb
- lib/rbbt/association/index.rb
- lib/rbbt/association/item.rb
- lib/rbbt/association/open.rb
- lib/rbbt/association/util.rb
- lib/rbbt/entity.rb
- lib/rbbt/entity/identifiers.rb
- lib/rbbt/fix_width_table.rb
- lib/rbbt/hpc.rb
- lib/rbbt/knowledge_base.rb
- lib/rbbt/knowledge_base/enrichment.rb
- lib/rbbt/knowledge_base/entity.rb
- lib/rbbt/knowledge_base/query.rb
- lib/rbbt/knowledge_base/registry.rb
- lib/rbbt/knowledge_base/syndicate.rb
- lib/rbbt/knowledge_base/traverse.rb
- lib/rbbt/monitor.rb
- lib/rbbt/packed_index.rb
- lib/rbbt/persist.rb
- lib/rbbt/persist/tsv.rb
- lib/rbbt/persist/tsv/adapter.rb
- lib/rbbt/persist/tsv/cdb.rb
- lib/rbbt/persist/tsv/fix_width_table.rb
- lib/rbbt/persist/tsv/kyotocabinet.rb
- lib/rbbt/persist/tsv/leveldb.rb
- lib/rbbt/persist/tsv/lmdb.rb
- lib/rbbt/persist/tsv/packed_index.rb
- lib/rbbt/persist/tsv/sharder.rb
- lib/rbbt/persist/tsv/tokyocabinet.rb
- lib/rbbt/resource.rb
- lib/rbbt/resource/path.rb
- lib/rbbt/resource/rake.rb
- lib/rbbt/resource/util.rb
- lib/rbbt/resource/with_key.rb
- lib/rbbt/rest/client.rb
- lib/rbbt/rest/client/adaptor.rb
- lib/rbbt/rest/client/get.rb
- lib/rbbt/rest/client/run.rb
- lib/rbbt/rest/client/step.rb
- lib/rbbt/tsv.rb
- lib/rbbt/tsv/accessor.rb
- lib/rbbt/tsv/attach.rb
- lib/rbbt/tsv/attach/util.rb
- lib/rbbt/tsv/change_id.rb
- lib/rbbt/tsv/dumper.rb
- lib/rbbt/tsv/excel.rb
- lib/rbbt/tsv/field_index.rb
- lib/rbbt/tsv/filter.rb
- lib/rbbt/tsv/index.rb
- lib/rbbt/tsv/manipulate.rb
- lib/rbbt/tsv/matrix.rb
- lib/rbbt/tsv/melt.rb
- lib/rbbt/tsv/parallel.rb
- lib/rbbt/tsv/parallel/through.rb
- lib/rbbt/tsv/parallel/traverse.rb
- lib/rbbt/tsv/parser.rb
- lib/rbbt/tsv/serializers.rb
- lib/rbbt/tsv/stream.rb
- lib/rbbt/tsv/util.rb
- lib/rbbt/util/R.rb
- lib/rbbt/util/R/eval.rb
- lib/rbbt/util/R/model.rb
- lib/rbbt/util/R/plot.rb
- lib/rbbt/util/chain_methods.rb
- lib/rbbt/util/cmd.rb
- lib/rbbt/util/color.rb
- lib/rbbt/util/colorize.rb
- lib/rbbt/util/concurrency.rb
- lib/rbbt/util/concurrency/processes.rb
- lib/rbbt/util/concurrency/processes/socket.rb
- lib/rbbt/util/concurrency/processes/worker.rb
- lib/rbbt/util/concurrency/threads.rb
- lib/rbbt/util/config.rb
- lib/rbbt/util/docker.rb
- lib/rbbt/util/excel2tsv.rb
- lib/rbbt/util/filecache.rb
- lib/rbbt/util/log.rb
- lib/rbbt/util/log/progress.rb
- lib/rbbt/util/log/progress/report.rb
- lib/rbbt/util/log/progress/util.rb
- lib/rbbt/util/misc.rb
- lib/rbbt/util/misc/annotated_module.rb
- lib/rbbt/util/misc/bgzf.rb
- lib/rbbt/util/misc/concurrent_stream.rb
- lib/rbbt/util/misc/development.rb
- lib/rbbt/util/misc/exceptions.rb
- lib/rbbt/util/misc/format.rb
- lib/rbbt/util/misc/indiferent_hash.rb
- lib/rbbt/util/misc/inspect.rb
- lib/rbbt/util/misc/lock.rb
- lib/rbbt/util/misc/manipulation.rb
- lib/rbbt/util/misc/math.rb
- lib/rbbt/util/misc/multipart_payload.rb
- lib/rbbt/util/misc/objects.rb
- lib/rbbt/util/misc/omics.rb
- lib/rbbt/util/misc/options.rb
- lib/rbbt/util/misc/pipes.rb
- lib/rbbt/util/misc/system.rb
- lib/rbbt/util/named_array.rb
- lib/rbbt/util/open.rb
- lib/rbbt/util/python.rb
- lib/rbbt/util/semaphore.rb
- lib/rbbt/util/simpleDSL.rb
- lib/rbbt/util/simpleopt.rb
- lib/rbbt/util/simpleopt/accessor.rb
- lib/rbbt/util/simpleopt/doc.rb
- lib/rbbt/util/simpleopt/get.rb
- lib/rbbt/util/simpleopt/parse.rb
- lib/rbbt/util/simpleopt/setup.rb
- lib/rbbt/util/tar.rb
- lib/rbbt/util/task/job.rb
- lib/rbbt/util/tc_cache.rb
- lib/rbbt/util/tmpfile.rb
- lib/rbbt/util/version.rb
- lib/rbbt/workflow.rb
- lib/rbbt/workflow/accessor.rb
- lib/rbbt/workflow/annotate.rb
- lib/rbbt/workflow/archive.rb
- lib/rbbt/workflow/definition.rb
- lib/rbbt/workflow/doc.rb
- lib/rbbt/workflow/examples.rb
- lib/rbbt/workflow/prepare.rb
- lib/rbbt/workflow/provenance.rb
- lib/rbbt/workflow/schedule.rb
- lib/rbbt/workflow/soap.rb
- lib/rbbt/workflow/step.rb
- lib/rbbt/workflow/step/dependencies.rb
- lib/rbbt/workflow/step/run.rb
- lib/rbbt/workflow/task.rb
- lib/rbbt/workflow/usage.rb
- share/Rlib/plot.R
- share/Rlib/svg.R
- share/Rlib/util.R
- share/color/color_names
- share/color/diverging_colors.hex
- share/config.ru
- share/install/software/lib/install_helpers
- share/rbbt_commands/alias
- share/rbbt_commands/app/install
- share/rbbt_commands/app/start
- share/rbbt_commands/app/template
- share/rbbt_commands/association/subset
- share/rbbt_commands/benchmark/pthrough
- share/rbbt_commands/benchmark/throughput
- share/rbbt_commands/benchmark/tsv
- share/rbbt_commands/check_bgzf
- share/rbbt_commands/cmd
- share/rbbt_commands/color
- share/rbbt_commands/conf/web_user/add
- share/rbbt_commands/conf/web_user/list
- share/rbbt_commands/conf/web_user/remove
- share/rbbt_commands/file_server/add
- share/rbbt_commands/file_server/list
- share/rbbt_commands/file_server/remove
- share/rbbt_commands/log
- share/rbbt_commands/resource/exists
- share/rbbt_commands/resource/find
- share/rbbt_commands/resource/get
- share/rbbt_commands/resource/produce
- share/rbbt_commands/rsync
- share/rbbt_commands/stat/abs
- share/rbbt_commands/stat/boxplot
- share/rbbt_commands/stat/compare_lists
- share/rbbt_commands/stat/density
- share/rbbt_commands/stat/heatmap
- share/rbbt_commands/stat/log
- share/rbbt_commands/stat/pvalue.qqplot
- share/rbbt_commands/study/maf2study
- share/rbbt_commands/study/task
- share/rbbt_commands/system/clean
- share/rbbt_commands/system/deleted_files
- share/rbbt_commands/system/optimize
- share/rbbt_commands/system/purge
- share/rbbt_commands/system/report
- share/rbbt_commands/system/status
- share/rbbt_commands/tsv/assemble_pdf_table
- share/rbbt_commands/tsv/attach
- share/rbbt_commands/tsv/change_id
- share/rbbt_commands/tsv/collapse
- share/rbbt_commands/tsv/get
- share/rbbt_commands/tsv/head
- share/rbbt_commands/tsv/info
- share/rbbt_commands/tsv/json
- share/rbbt_commands/tsv/query
- share/rbbt_commands/tsv/read
- share/rbbt_commands/tsv/read_excel
- share/rbbt_commands/tsv/slice
- share/rbbt_commands/tsv/sort
- share/rbbt_commands/tsv/subset
- share/rbbt_commands/tsv/transpose
- share/rbbt_commands/tsv/unzip
- share/rbbt_commands/tsv/values
- share/rbbt_commands/tsv/write_excel
- share/rbbt_commands/tsv/zip
- share/rbbt_commands/watch
- share/rbbt_commands/workflow/archive
- share/rbbt_commands/workflow/archive_all
- share/rbbt_commands/workflow/cmd
- share/rbbt_commands/workflow/example
- share/rbbt_commands/workflow/info
- share/rbbt_commands/workflow/init
- share/rbbt_commands/workflow/install
- share/rbbt_commands/workflow/jobs
- share/rbbt_commands/workflow/knowledge_base
- share/rbbt_commands/workflow/list
- share/rbbt_commands/workflow/monitor
- share/rbbt_commands/workflow/prov
- share/rbbt_commands/workflow/remote/add
- share/rbbt_commands/workflow/remote/list
- share/rbbt_commands/workflow/remote/remove
- share/rbbt_commands/workflow/server
- share/rbbt_commands/workflow/task
- share/rbbt_commands/workflow/trace
- share/unicorn.rb
- share/workflow_config.ru
- test/rbbt/annotations/test_util.rb
- test/rbbt/association/test_database.rb
- test/rbbt/association/test_index.rb
- test/rbbt/association/test_item.rb
- test/rbbt/association/test_open.rb
- test/rbbt/association/test_util.rb
- test/rbbt/entity/test_identifiers.rb
- test/rbbt/knowledge_base/test_enrichment.rb
- test/rbbt/knowledge_base/test_entity.rb
- test/rbbt/knowledge_base/test_query.rb
- test/rbbt/knowledge_base/test_registry.rb
- test/rbbt/knowledge_base/test_syndicate.rb
- test/rbbt/knowledge_base/test_traverse.rb
- test/rbbt/persist/test_tsv.rb
- test/rbbt/persist/tsv/test_cdb.rb
- test/rbbt/persist/tsv/test_kyotocabinet.rb
- test/rbbt/persist/tsv/test_leveldb.rb
- test/rbbt/persist/tsv/test_lmdb.rb
- test/rbbt/persist/tsv/test_sharder.rb
- test/rbbt/persist/tsv/test_tokyocabinet.rb
- test/rbbt/resource/test_path.rb
- test/rbbt/test_annotations.rb
- test/rbbt/test_association.rb
- test/rbbt/test_entity.rb
- test/rbbt/test_fix_width_table.rb
- test/rbbt/test_knowledge_base.rb
- test/rbbt/test_monitor.rb
- test/rbbt/test_packed_index.rb
- test/rbbt/test_persist.rb
- test/rbbt/test_resource.rb
- test/rbbt/test_tsv.rb
- test/rbbt/test_workflow.rb
- test/rbbt/tsv/parallel/test_through.rb
- test/rbbt/tsv/parallel/test_traverse.rb
- test/rbbt/tsv/test_accessor.rb
- test/rbbt/tsv/test_attach.rb
- test/rbbt/tsv/test_change_id.rb
- test/rbbt/tsv/test_excel.rb
- test/rbbt/tsv/test_field_index.rb
- test/rbbt/tsv/test_filter.rb
- test/rbbt/tsv/test_index.rb
- test/rbbt/tsv/test_manipulate.rb
- test/rbbt/tsv/test_matrix.rb
- test/rbbt/tsv/test_parallel.rb
- test/rbbt/tsv/test_parser.rb
- test/rbbt/tsv/test_stream.rb
- test/rbbt/tsv/test_util.rb
- test/rbbt/util/R/test_eval.rb
- test/rbbt/util/R/test_model.rb
- test/rbbt/util/R/test_plot.rb
- test/rbbt/util/concurrency/processes/test_socket.rb
- test/rbbt/util/concurrency/test_processes.rb
- test/rbbt/util/concurrency/test_threads.rb
- test/rbbt/util/log/test_progress.rb
- test/rbbt/util/misc/test_bgzf.rb
- test/rbbt/util/misc/test_lock.rb
- test/rbbt/util/misc/test_multipart_payload.rb
- test/rbbt/util/misc/test_omics.rb
- test/rbbt/util/misc/test_pipes.rb
- test/rbbt/util/simpleopt/test_get.rb
- test/rbbt/util/simpleopt/test_parse.rb
- test/rbbt/util/simpleopt/test_setup.rb
- test/rbbt/util/test_R.rb
- test/rbbt/util/test_chain_methods.rb
- test/rbbt/util/test_cmd.rb
- test/rbbt/util/test_colorize.rb
- test/rbbt/util/test_concurrency.rb
- test/rbbt/util/test_config.rb
- test/rbbt/util/test_excel2tsv.rb
- test/rbbt/util/test_filecache.rb
- test/rbbt/util/test_log.rb
- test/rbbt/util/test_misc.rb
- test/rbbt/util/test_open.rb
- test/rbbt/util/test_semaphore.rb
- test/rbbt/util/test_simpleDSL.rb
- test/rbbt/util/test_simpleopt.rb
- test/rbbt/util/test_tmpfile.rb
- test/rbbt/workflow/step/test_dependencies.rb
- test/rbbt/workflow/test_doc.rb
- test/rbbt/workflow/test_step.rb
- test/rbbt/workflow/test_task.rb
- test/test_helper.rb
homepage: http://github.com/mikisvaz/rbbt-util
licenses:
- MIT
metadata: {}
post_install_message: 
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubygems_version: 3.0.3
signing_key: 
specification_version: 4
summary: Utilities for the Ruby Bioinformatics Toolkit (rbbt)
test_files:
- test/rbbt/test_entity.rb
- test/rbbt/workflow/test_doc.rb
- test/rbbt/workflow/test_step.rb
- test/rbbt/workflow/step/test_dependencies.rb
- test/rbbt/workflow/test_task.rb
- test/rbbt/resource/test_path.rb
- test/rbbt/util/test_colorize.rb
- test/rbbt/util/misc/test_omics.rb
- test/rbbt/util/misc/test_pipes.rb
- test/rbbt/util/misc/test_lock.rb
- test/rbbt/util/misc/test_multipart_payload.rb
- test/rbbt/util/misc/test_bgzf.rb
- test/rbbt/util/test_concurrency.rb
- test/rbbt/util/test_cmd.rb
- test/rbbt/util/R/test_plot.rb
- test/rbbt/util/R/test_eval.rb
- test/rbbt/util/R/test_model.rb
- test/rbbt/util/test_config.rb
- test/rbbt/util/test_log.rb
- test/rbbt/util/test_simpleDSL.rb
- test/rbbt/util/log/test_progress.rb
- test/rbbt/util/test_tmpfile.rb
- test/rbbt/util/test_R.rb
- test/rbbt/util/test_excel2tsv.rb
- test/rbbt/util/test_misc.rb
- test/rbbt/util/test_open.rb
- test/rbbt/util/test_simpleopt.rb
- test/rbbt/util/simpleopt/test_parse.rb
- test/rbbt/util/simpleopt/test_setup.rb
- test/rbbt/util/simpleopt/test_get.rb
- test/rbbt/util/test_filecache.rb
- test/rbbt/util/concurrency/test_processes.rb
- test/rbbt/util/concurrency/test_threads.rb
- test/rbbt/util/concurrency/processes/test_socket.rb
- test/rbbt/util/test_semaphore.rb
- test/rbbt/util/test_chain_methods.rb
- test/rbbt/test_resource.rb
- test/rbbt/test_packed_index.rb
- test/rbbt/tsv/test_change_id.rb
- test/rbbt/tsv/test_attach.rb
- test/rbbt/tsv/test_filter.rb
- test/rbbt/tsv/test_parser.rb
- test/rbbt/tsv/test_accessor.rb
- test/rbbt/tsv/test_matrix.rb
- test/rbbt/tsv/test_field_index.rb
- test/rbbt/tsv/test_util.rb
- test/rbbt/tsv/test_index.rb
- test/rbbt/tsv/test_parallel.rb
- test/rbbt/tsv/test_manipulate.rb
- test/rbbt/tsv/test_excel.rb
- test/rbbt/tsv/parallel/test_through.rb
- test/rbbt/tsv/parallel/test_traverse.rb
- test/rbbt/tsv/test_stream.rb
- test/rbbt/test_association.rb
- test/rbbt/association/test_database.rb
- test/rbbt/association/test_item.rb
- test/rbbt/association/test_open.rb
- test/rbbt/association/test_util.rb
- test/rbbt/association/test_index.rb
- test/rbbt/test_knowledge_base.rb
- test/rbbt/persist/tsv/test_kyotocabinet.rb
- test/rbbt/persist/tsv/test_cdb.rb
- test/rbbt/persist/tsv/test_lmdb.rb
- test/rbbt/persist/tsv/test_sharder.rb
- test/rbbt/persist/tsv/test_leveldb.rb
- test/rbbt/persist/tsv/test_tokyocabinet.rb
- test/rbbt/persist/test_tsv.rb
- test/rbbt/test_tsv.rb
- test/rbbt/test_annotations.rb
- test/rbbt/test_fix_width_table.rb
- test/rbbt/test_workflow.rb
- test/rbbt/entity/test_identifiers.rb
- test/rbbt/annotations/test_util.rb
- test/rbbt/test_monitor.rb
- test/rbbt/test_persist.rb
- test/rbbt/knowledge_base/test_entity.rb
- test/rbbt/knowledge_base/test_registry.rb
- test/rbbt/knowledge_base/test_syndicate.rb
- test/rbbt/knowledge_base/test_query.rb
- test/rbbt/knowledge_base/test_enrichment.rb
- test/rbbt/knowledge_base/test_traverse.rb
- test/test_helper.rb