Sha256: 5da7aa75c2e4b3e36b1b7600dfe6034b667148ec9ede6b54159e473d62f1f1b7
Contents?: true
Size: 687 Bytes
Versions: 8
Compression:
Stored size: 687 Bytes
Contents
# seq1 and seq2 are from greengenes (2012_05?) ben@u:~/git/priner/spec/data/contig_printer/1$ sequenceChop.pl ../../fluff/1/seq1.fa 1 550 >seq1_1to550.fa Chopped 1 sequence(s) ben@u:~/git/priner/spec/data/contig_printer/1$ sequenceChop.pl ../../fluff/1/seq2.fa 1 550 >seq2_1to550.fa Chopped 1 sequence(s) ben@u:~/git/priner/spec/data/contig_printer/1$ ~/git/sammy/sammy.pl -r <(cat seq1_1to550.fa seq2_1to550.fa) -i 202 -n 300 -c 30 >seq.fa ben@u:~/git/priner/spec/data/contig_printer/1$ sequenceChop.pl seq1_1to550.fa 1 90 >contigs.fa Chopped 1 sequence(s) ben@u:~/git/priner/spec/data/contig_printer/1$ sequenceChop.pl seq1_1to550.fa 400 490 >>contigs.fa Chopped 1 sequence(s)
Version data entries
8 entries across 8 versions & 1 rubygems