Sha256: 5d8d516829da02995c0a68f39f7c1abf772d5a208b6711ef9d91ac35effe59d2
Contents?: true
Size: 600 Bytes
Versions: 8
Compression:
Stored size: 600 Bytes
Contents
#!/usr/bin/env ruby
require 'scbi_fasta'
if ARGV.count < 3
puts "#{$0} FASTA_FILE OUTPUT_NAME SEQS_PER_FILE_COUNT"
exit
end
fastq = ARGV.shift
output_name = ARGV.shift
split_by = ARGV.shift.to_i
file_index=1
out=File.new("#{output_name}#{file_index}.fasta",'w')
fqr=FastaQualFile.new(fastq)
count = 0
fqr.each do |seq_name,seq_fasta,comments|
if (count >= split_by)
count=0
file_index +=1
out.close
out=File.new("#{output_name}#{file_index}.fasta",'w')
end
out.puts(">#{seq_name} #{comments}")
out.puts(seq_fasta)
count +=1
end
out.close if out
fqr.close
Version data entries
8 entries across 8 versions & 1 rubygems