Sha256: 5cb909c8d5e0169a5499096915dc66209514ab6e9ef33e4bb7cb048368f62551
Contents?: true
Size: 915 Bytes
Versions: 4
Compression:
Stored size: 915 Bytes
Contents
$LOAD_PATH.unshift(File.join(File.dirname(__FILE__),'..', '..', '..', '..', 'lib'))
require 'rbbt/sources/biomart'
require 'rbbt/sources/entrez'
$interpro_db = 'entry'
$interpro_id = ['InterPro Entry Accession','entry_id']
$interpro_pos = [
["UniProt/SwissProt Accession", "protein_ac"],
["Match Start Position", "pos_from"],
["Match Stop Position ", "pos_to"]
]
file 'interpro_positions' do |t|
Open.write(t.name, InterPro.tsv($interpro_db, $interpro_id, $interpro_pos, [], nil, :type => :double, :nocache => true).to_s)
end
file 'interpro_names' do |t|
Open.write(t.name, "#: :type=:list\n#InterPro Entry Accession\tName\n" + Open.read("ftp://ftp.ebi.ac.uk/pub/databases/interpro/names.dat"))
end
file 'interpro_short_names' do |t|
Open.write(t.name, "#: :type=:list\n#InterPro Entry Accession\tShort Name\n" + Open.read("ftp://ftp.ebi.ac.uk/pub/databases/interpro/short_names.dat"))
end
Version data entries
4 entries across 4 versions & 1 rubygems