<?xml version="1.0" encoding="UTF-8"?>
<?xml-stylesheet type="text/xsl" href="/tools/bin/TPP/tpp/schema/pepXML_std.xsl"?>
<msms_pipeline_analysis date="2006-07-20T17:23:26" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://regis-web.systemsbiology.net/pepXML /tools/bin/TPP/tpp/schema/pepXML_v18.xsd" summary_xml="000.xml">
<msms_run_summary base_name="/work/john/021112.EcoliSol37.1/000" msManufacturer="ThermoFinnigan" msModel="LCQ Classic" msIonization="ESI" msMassAnalyzer="Ion Trap" msDetector="UNKNOWN" raw_data_type="raw" raw_data=".mzXML">
<sample_enzyme name="trypsin">
<specificity cut="KR" no_cut="P" sense="C"/>
</sample_enzyme>
<search_summary base_name="/work/john/021112.EcoliSol37.1/000" search_engine="SEQUEST" precursor_mass_type="average" fragment_mass_type="average" out_data_type="out" out_data=".tgz" search_id="1">
<search_database local_path="/work/ms/database/ecoli_K12.fasta" type="AA"/>
<enzymatic_search_constraint enzyme="Trypsin" max_num_internal_cleavages="2" min_number_termini="2"/>
<parameter name="peptide_mass_tol" value="1.500"/>
<parameter name="fragment_ion_tol" value="0.000"/>
<parameter name="ion_series" value=" 0 1 1 0.0 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0"/>
<parameter name="max_num_differential_AA_per_mod" value="4"/>
<parameter name="nucleotide_reading_frame" value="0"/>
<parameter name="num_output_lines" value="10"/>
<parameter name="remove_precursor_peak" value="0"/>
<parameter name="ion_cutoff_percentage" value="0.0"/>
<parameter name="match_peak_count" value="0"/>
<parameter name="match_peak_allowed_error" value="1"/>
<parameter name="match_peak_tolerance" value="1.0"/>
<parameter name="protein_mass_filter" value="0 0"/>
<parameter name="sequence_header_filter" value=""/>
</search_summary>
    <spectrum_query spectrum="000.100.100.1" start_scan="100" end_scan="100" precursor_neutral_mass="1074.5920" assumed_charge="1" index="1">
    <search_result>      <search_hit hit_rank="1" peptide="SIYFRNFK" peptide_prev_aa="R" peptide_next_aa="G" protein="gi|16130084|ref|NP_416651.1|" num_tot_proteins="1" num_matched_ions="  4" tot_num_ions=" 14" calc_neutral_pep_mass="1074.1920" massdiff="+0.4" num_tol_term="2" num_missed_cleavages="1" is_rejected="0">
        <search_score name="xcorr" value="0.400"/>
        <search_score name="deltacn" value="0.023"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="78.8"/>
        <search_score name="sprank" value="1"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1000.1000.1" start_scan="1000" end_scan="1000" precursor_neutral_mass="663.1920" assumed_charge="1" index="2">
    <search_result>      <search_hit hit_rank="1" peptide="ALADFK" peptide_prev_aa="R" peptide_next_aa="S" protein="gi|16128765|ref|NP_415318.1|" num_tot_proteins="1" num_matched_ions="  5" tot_num_ions=" 10" calc_neutral_pep_mass="663.7920" massdiff="-0.6" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="0.965"/>
        <search_score name="deltacn" value="0.132"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="81.1"/>
        <search_score name="sprank" value="1"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1002.1002.1" start_scan="1002" end_scan="1002" precursor_neutral_mass="1291.6920" assumed_charge="1" index="3">
    <search_result>      <search_hit hit_rank="1" peptide="EETEWRVQSK" peptide_prev_aa="R" peptide_next_aa="R" protein="gi|16128280|ref|NP_414829.1|" num_tot_proteins="1" num_matched_ions=" 10" tot_num_ions=" 18" calc_neutral_pep_mass="1291.3920" massdiff="+0.3" num_tol_term="2" num_missed_cleavages="1" is_rejected="0">
        <search_score name="xcorr" value="0.904"/>
        <search_score name="deltacn" value="0.041"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="140.0"/>
        <search_score name="sprank" value="1"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1003.1003.1" start_scan="1003" end_scan="1003" precursor_neutral_mass="769.3920" assumed_charge="1" index="4">
    <search_result>      <search_hit hit_rank="1" peptide="NIGLLNK" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|16129238|ref|NP_415793.1|" num_tot_proteins="1" num_matched_ions="  8" tot_num_ions=" 12" calc_neutral_pep_mass="770.8920" massdiff="-1.5" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="0.887"/>
        <search_score name="deltacn" value="0.115"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="153.1"/>
        <search_score name="sprank" value="2"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1004.1004.2" start_scan="1004" end_scan="1004" precursor_neutral_mass="1252.2920" assumed_charge="2" index="5">
    <search_result>      <search_hit hit_rank="1" peptide="QLTYTAHGPHK" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|16131568|ref|NP_418155.1|" num_tot_proteins="1" num_matched_ions="  7" tot_num_ions=" 20" calc_neutral_pep_mass="1252.3920" massdiff="-0.1" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="1.066"/>
        <search_score name="deltacn" value="0.172"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="125.2"/>
        <search_score name="sprank" value="10"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1004.1004.3" start_scan="1004" end_scan="1004" precursor_neutral_mass="1878.4920" assumed_charge="3" index="6">
    <search_result>      <search_hit hit_rank="1" peptide="AGNARVVNSNAMSFLAQK" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|16131337|ref|NP_417922.1|" num_tot_proteins="1" num_matched_ions=" 16" tot_num_ions=" 68" calc_neutral_pep_mass="1878.0920" massdiff="+0.4" num_tol_term="2" num_missed_cleavages="1" is_rejected="0">
        <search_score name="xcorr" value="1.370"/>
        <search_score name="deltacn" value="0.199"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="245.0"/>
        <search_score name="sprank" value="2"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1006.1006.2" start_scan="1006" end_scan="1006" precursor_neutral_mass="888.1920" assumed_charge="2" index="7">
    <search_result>      <search_hit hit_rank="1" peptide="GNSRDIVK" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|16131041|ref|NP_417618.1|" num_tot_proteins="1" num_matched_ions="  9" tot_num_ions=" 14" calc_neutral_pep_mass="887.9920" massdiff="+0.2" num_tol_term="2" num_missed_cleavages="1" is_rejected="0">
        <search_score name="xcorr" value="0.982"/>
        <search_score name="deltacn" value="0.006"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="267.3"/>
        <search_score name="sprank" value="6"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1006.1006.3" start_scan="1006" end_scan="1006" precursor_neutral_mass="1332.2920" assumed_charge="3" index="8">
    <search_result>      <search_hit hit_rank="1" peptide="MAAGENPAAEMIK" peptide_prev_aa="K" peptide_next_aa="S" protein="gi|16132265|ref|NP_418563.1|" num_tot_proteins="2" num_matched_ions=" 16" tot_num_ions=" 48" calc_neutral_pep_mass="1332.5920" massdiff="-0.3" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="1.058"/>
        <search_score name="deltacn" value="0.191"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="177.5"/>
        <search_score name="sprank" value="8"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1007.1007.1" start_scan="1007" end_scan="1007" precursor_neutral_mass="867.2920" assumed_charge="1" index="9">
    <search_result>      <search_hit hit_rank="1" peptide="GALLHVEK" peptide_prev_aa="K" peptide_next_aa="M" protein="gi|16128020|ref|NP_414567.1|" num_tot_proteins="1" num_matched_ions="  4" tot_num_ions=" 14" calc_neutral_pep_mass="865.9920" massdiff="+1.3" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="0.467"/>
        <search_score name="deltacn" value="0.011"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="39.4"/>
        <search_score name="sprank" value="30"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1008.1008.2" start_scan="1008" end_scan="1008" precursor_neutral_mass="691.0920" assumed_charge="2" index="10">
    <search_result>      <search_hit hit_rank="1" peptide="RLFTR" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|16130457|ref|NP_417027.1|" num_tot_proteins="1" num_matched_ions="  5" tot_num_ions="  8" calc_neutral_pep_mass="691.7920" massdiff="-0.7" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="0.903"/>
        <search_score name="deltacn" value="0.333"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="172.8"/>
        <search_score name="sprank" value="1"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1008.1008.3" start_scan="1008" end_scan="1008" precursor_neutral_mass="1036.7920" assumed_charge="3" index="11">
    <search_result>      <search_hit hit_rank="1" peptide="VHEGLNTLR" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|16128370|ref|NP_414919.1|" num_tot_proteins="1" num_matched_ions="  6" tot_num_ions=" 32" calc_neutral_pep_mass="1038.1920" massdiff="-1.4" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="0.767"/>
        <search_score name="deltacn" value="0.089"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="66.1"/>
        <search_score name="sprank" value="18"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1010.1010.1" start_scan="1010" end_scan="1010" precursor_neutral_mass="869.4920" assumed_charge="1" index="12">
    <search_result>      <search_hit hit_rank="1" peptide="HFRALVK" peptide_prev_aa="K" peptide_next_aa="H" protein="gi|16130926|ref|NP_417502.1|" num_tot_proteins="1" num_matched_ions="  7" tot_num_ions=" 12" calc_neutral_pep_mass="870.0920" massdiff="-0.6" num_tol_term="2" num_missed_cleavages="1" is_rejected="0">
        <search_score name="xcorr" value="0.995"/>
        <search_score name="deltacn" value="0.065"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="152.2"/>
        <search_score name="sprank" value="1"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1011.1011.1" start_scan="1011" end_scan="1011" precursor_neutral_mass="734.4920" assumed_charge="1" index="13">
    <search_result>      <search_hit hit_rank="1" peptide="FRDGLK" peptide_prev_aa="R" peptide_next_aa="E" protein="gi|16132019|ref|NP_418618.1|" num_tot_proteins="1" num_matched_ions="  7" tot_num_ions=" 10" calc_neutral_pep_mass="734.8920" massdiff="-0.4" num_tol_term="2" num_missed_cleavages="1" is_rejected="0">
        <search_score name="xcorr" value="1.467"/>
        <search_score name="deltacn" value="0.396"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="140.5"/>
        <search_score name="sprank" value="1"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1012.1012.1" start_scan="1012" end_scan="1012" precursor_neutral_mass="899.3920" assumed_charge="1" index="14">
    <search_result>      <search_hit hit_rank="1" peptide="RQLAERK" peptide_prev_aa="R" peptide_next_aa="Q" protein="gi|16129398|ref|NP_415956.1|" num_tot_proteins="1" num_matched_ions="  6" tot_num_ions=" 12" calc_neutral_pep_mass="899.9920" massdiff="-0.6" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="0.797"/>
        <search_score name="deltacn" value="0.156"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="37.7"/>
        <search_score name="sprank" value="8"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1014.1014.1" start_scan="1014" end_scan="1014" precursor_neutral_mass="869.5920" assumed_charge="1" index="15">
    <search_result>      <search_hit hit_rank="1" peptide="HFRALVK" peptide_prev_aa="K" peptide_next_aa="H" protein="gi|16130926|ref|NP_417502.1|" num_tot_proteins="1" num_matched_ions="  6" tot_num_ions=" 12" calc_neutral_pep_mass="870.0920" massdiff="-0.5" num_tol_term="2" num_missed_cleavages="1" is_rejected="0">
        <search_score name="xcorr" value="0.908"/>
        <search_score name="deltacn" value="0.005"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="110.4"/>
        <search_score name="sprank" value="12"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1015.1015.1" start_scan="1015" end_scan="1015" precursor_neutral_mass="1077.9920" assumed_charge="1" index="16">
    <search_result>      <search_hit hit_rank="1" peptide="KVYQLAETK" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|16128363|ref|NP_414912.1|" num_tot_proteins="1" num_matched_ions="  8" tot_num_ions=" 16" calc_neutral_pep_mass="1079.2920" massdiff="-1.3" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="0.897"/>
        <search_score name="deltacn" value="0.056"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="125.1"/>
        <search_score name="sprank" value="1"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1016.1016.1" start_scan="1016" end_scan="1016" precursor_neutral_mass="871.6920" assumed_charge="1" index="17">
    <search_result>      <search_hit hit_rank="1" peptide="VGAITAANR" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|16129608|ref|NP_416167.1|" num_tot_proteins="1" num_matched_ions="  9" tot_num_ions=" 16" calc_neutral_pep_mass="871.9920" massdiff="-0.3" num_tol_term="2" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="1.028"/>
        <search_score name="deltacn" value="0.115"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="238.6"/>
        <search_score name="sprank" value="1"/>
      </search_hit>
    </search_result>
    </spectrum_query>
    <spectrum_query spectrum="000.1018.1018.1" start_scan="1018" end_scan="1018" precursor_neutral_mass="919.7920" assumed_charge="1" index="18">
    <search_result>      <search_hit hit_rank="1" peptide="DFLIATLK" peptide_prev_aa="K" peptide_next_aa="P" protein="gi|16131978|ref|NP_418577.1|" num_tot_proteins="1" num_matched_ions="  7" tot_num_ions=" 14" calc_neutral_pep_mass="920.0920" massdiff="-0.3" num_tol_term="1" num_missed_cleavages="0" is_rejected="0">
        <search_score name="xcorr" value="1.010"/>
        <search_score name="deltacn" value="0.156"/>
        <search_score name="deltacnstar" value="0"/>
        <search_score name="spscore" value="79.2"/>
        <search_score name="sprank" value="7"/>
      </search_hit>
    </search_result>
    </spectrum_query>
  </msms_run_summary>
</msms_pipeline_analysis>