# frozen_string_literal: true # WARNING ABOUT GENERATED CODE # # This file is generated. See the contributing guide for more information: # https://github.com/aws/aws-sdk-ruby/blob/version-3/CONTRIBUTING.md # # WARNING ABOUT GENERATED CODE require 'seahorse/client/plugins/content_length.rb' require 'aws-sdk-core/plugins/credentials_configuration.rb' require 'aws-sdk-core/plugins/logging.rb' require 'aws-sdk-core/plugins/param_converter.rb' require 'aws-sdk-core/plugins/param_validator.rb' require 'aws-sdk-core/plugins/user_agent.rb' require 'aws-sdk-core/plugins/helpful_socket_errors.rb' require 'aws-sdk-core/plugins/retry_errors.rb' require 'aws-sdk-core/plugins/global_configuration.rb' require 'aws-sdk-core/plugins/regional_endpoint.rb' require 'aws-sdk-core/plugins/endpoint_discovery.rb' require 'aws-sdk-core/plugins/endpoint_pattern.rb' require 'aws-sdk-core/plugins/response_paging.rb' require 'aws-sdk-core/plugins/stub_responses.rb' require 'aws-sdk-core/plugins/idempotency_token.rb' require 'aws-sdk-core/plugins/invocation_id.rb' require 'aws-sdk-core/plugins/jsonvalue_converter.rb' require 'aws-sdk-core/plugins/client_metrics_plugin.rb' require 'aws-sdk-core/plugins/client_metrics_send_plugin.rb' require 'aws-sdk-core/plugins/transfer_encoding.rb' require 'aws-sdk-core/plugins/http_checksum.rb' require 'aws-sdk-core/plugins/checksum_algorithm.rb' require 'aws-sdk-core/plugins/request_compression.rb' require 'aws-sdk-core/plugins/defaults_mode.rb' require 'aws-sdk-core/plugins/recursion_detection.rb' require 'aws-sdk-core/plugins/sign.rb' require 'aws-sdk-core/plugins/protocols/rest_json.rb' Aws::Plugins::GlobalConfiguration.add_identifier(:omics) module Aws::Omics # An API client for Omics. To construct a client, you need to configure a `:region` and `:credentials`. # # client = Aws::Omics::Client.new( # region: region_name, # credentials: credentials, # # ... # ) # # For details on configuring region and credentials see # the [developer guide](/sdk-for-ruby/v3/developer-guide/setup-config.html). # # See {#initialize} for a full list of supported configuration options. class Client < Seahorse::Client::Base include Aws::ClientStubs @identifier = :omics set_api(ClientApi::API) add_plugin(Seahorse::Client::Plugins::ContentLength) add_plugin(Aws::Plugins::CredentialsConfiguration) add_plugin(Aws::Plugins::Logging) add_plugin(Aws::Plugins::ParamConverter) add_plugin(Aws::Plugins::ParamValidator) add_plugin(Aws::Plugins::UserAgent) add_plugin(Aws::Plugins::HelpfulSocketErrors) add_plugin(Aws::Plugins::RetryErrors) add_plugin(Aws::Plugins::GlobalConfiguration) add_plugin(Aws::Plugins::RegionalEndpoint) add_plugin(Aws::Plugins::EndpointDiscovery) add_plugin(Aws::Plugins::EndpointPattern) add_plugin(Aws::Plugins::ResponsePaging) add_plugin(Aws::Plugins::StubResponses) add_plugin(Aws::Plugins::IdempotencyToken) add_plugin(Aws::Plugins::InvocationId) add_plugin(Aws::Plugins::JsonvalueConverter) add_plugin(Aws::Plugins::ClientMetricsPlugin) add_plugin(Aws::Plugins::ClientMetricsSendPlugin) add_plugin(Aws::Plugins::TransferEncoding) add_plugin(Aws::Plugins::HttpChecksum) add_plugin(Aws::Plugins::ChecksumAlgorithm) add_plugin(Aws::Plugins::RequestCompression) add_plugin(Aws::Plugins::DefaultsMode) add_plugin(Aws::Plugins::RecursionDetection) add_plugin(Aws::Plugins::Sign) add_plugin(Aws::Plugins::Protocols::RestJson) add_plugin(Aws::Omics::Plugins::Endpoints) # @overload initialize(options) # @param [Hash] options # @option options [required, Aws::CredentialProvider] :credentials # Your AWS credentials. This can be an instance of any one of the # following classes: # # * `Aws::Credentials` - Used for configuring static, non-refreshing # credentials. # # * `Aws::SharedCredentials` - Used for loading static credentials from a # shared file, such as `~/.aws/config`. # # * `Aws::AssumeRoleCredentials` - Used when you need to assume a role. # # * `Aws::AssumeRoleWebIdentityCredentials` - Used when you need to # assume a role after providing credentials via the web. # # * `Aws::SSOCredentials` - Used for loading credentials from AWS SSO using an # access token generated from `aws login`. # # * `Aws::ProcessCredentials` - Used for loading credentials from a # process that outputs to stdout. # # * `Aws::InstanceProfileCredentials` - Used for loading credentials # from an EC2 IMDS on an EC2 instance. # # * `Aws::ECSCredentials` - Used for loading credentials from # instances running in ECS. # # * `Aws::CognitoIdentityCredentials` - Used for loading credentials # from the Cognito Identity service. # # When `:credentials` are not configured directly, the following # locations will be searched for credentials: # # * `Aws.config[:credentials]` # * The `:access_key_id`, `:secret_access_key`, and `:session_token` options. # * ENV['AWS_ACCESS_KEY_ID'], ENV['AWS_SECRET_ACCESS_KEY'] # * `~/.aws/credentials` # * `~/.aws/config` # * EC2/ECS IMDS instance profile - When used by default, the timeouts # are very aggressive. Construct and pass an instance of # `Aws::InstanceProfileCredentails` or `Aws::ECSCredentials` to # enable retries and extended timeouts. Instance profile credential # fetching can be disabled by setting ENV['AWS_EC2_METADATA_DISABLED'] # to true. # # @option options [required, String] :region # The AWS region to connect to. The configured `:region` is # used to determine the service `:endpoint`. When not passed, # a default `:region` is searched for in the following locations: # # * `Aws.config[:region]` # * `ENV['AWS_REGION']` # * `ENV['AMAZON_REGION']` # * `ENV['AWS_DEFAULT_REGION']` # * `~/.aws/credentials` # * `~/.aws/config` # # @option options [String] :access_key_id # # @option options [Boolean] :active_endpoint_cache (false) # When set to `true`, a thread polling for endpoints will be running in # the background every 60 secs (default). Defaults to `false`. # # @option options [Boolean] :adaptive_retry_wait_to_fill (true) # Used only in `adaptive` retry mode. When true, the request will sleep # until there is sufficent client side capacity to retry the request. # When false, the request will raise a `RetryCapacityNotAvailableError` and will # not retry instead of sleeping. # # @option options [Boolean] :client_side_monitoring (false) # When `true`, client-side metrics will be collected for all API requests from # this client. # # @option options [String] :client_side_monitoring_client_id ("") # Allows you to provide an identifier for this client which will be attached to # all generated client side metrics. Defaults to an empty string. # # @option options [String] :client_side_monitoring_host ("127.0.0.1") # Allows you to specify the DNS hostname or IPv4 or IPv6 address that the client # side monitoring agent is running on, where client metrics will be published via UDP. # # @option options [Integer] :client_side_monitoring_port (31000) # Required for publishing client metrics. The port that the client side monitoring # agent is running on, where client metrics will be published via UDP. # # @option options [Aws::ClientSideMonitoring::Publisher] :client_side_monitoring_publisher (Aws::ClientSideMonitoring::Publisher) # Allows you to provide a custom client-side monitoring publisher class. By default, # will use the Client Side Monitoring Agent Publisher. # # @option options [Boolean] :convert_params (true) # When `true`, an attempt is made to coerce request parameters into # the required types. # # @option options [Boolean] :correct_clock_skew (true) # Used only in `standard` and adaptive retry modes. Specifies whether to apply # a clock skew correction and retry requests with skewed client clocks. # # @option options [String] :defaults_mode ("legacy") # See {Aws::DefaultsModeConfiguration} for a list of the # accepted modes and the configuration defaults that are included. # # @option options [Boolean] :disable_host_prefix_injection (false) # Set to true to disable SDK automatically adding host prefix # to default service endpoint when available. # # @option options [Boolean] :disable_request_compression (false) # When set to 'true' the request body will not be compressed # for supported operations. # # @option options [String, URI::HTTPS, URI::HTTP] :endpoint # Normally you should not configure the `:endpoint` option # directly. This is normally constructed from the `:region` # option. Configuring `:endpoint` is normally reserved for # connecting to test or custom endpoints. The endpoint should # be a URI formatted like: # # 'http://example.com' # 'https://example.com' # 'http://example.com:123' # # # @option options [Integer] :endpoint_cache_max_entries (1000) # Used for the maximum size limit of the LRU cache storing endpoints data # for endpoint discovery enabled operations. Defaults to 1000. # # @option options [Integer] :endpoint_cache_max_threads (10) # Used for the maximum threads in use for polling endpoints to be cached, defaults to 10. # # @option options [Integer] :endpoint_cache_poll_interval (60) # When :endpoint_discovery and :active_endpoint_cache is enabled, # Use this option to config the time interval in seconds for making # requests fetching endpoints information. Defaults to 60 sec. # # @option options [Boolean] :endpoint_discovery (false) # When set to `true`, endpoint discovery will be enabled for operations when available. # # @option options [Boolean] :ignore_configured_endpoint_urls # Setting to true disables use of endpoint URLs provided via environment # variables and the shared configuration file. # # @option options [Aws::Log::Formatter] :log_formatter (Aws::Log::Formatter.default) # The log formatter. # # @option options [Symbol] :log_level (:info) # The log level to send messages to the `:logger` at. # # @option options [Logger] :logger # The Logger instance to send log messages to. If this option # is not set, logging will be disabled. # # @option options [Integer] :max_attempts (3) # An integer representing the maximum number attempts that will be made for # a single request, including the initial attempt. For example, # setting this value to 5 will result in a request being retried up to # 4 times. Used in `standard` and `adaptive` retry modes. # # @option options [String] :profile ("default") # Used when loading credentials from the shared credentials file # at HOME/.aws/credentials. When not specified, 'default' is used. # # @option options [Integer] :request_min_compression_size_bytes (10240) # The minimum size in bytes that triggers compression for request # bodies. The value must be non-negative integer value between 0 # and 10485780 bytes inclusive. # # @option options [Proc] :retry_backoff # A proc or lambda used for backoff. Defaults to 2**retries * retry_base_delay. # This option is only used in the `legacy` retry mode. # # @option options [Float] :retry_base_delay (0.3) # The base delay in seconds used by the default backoff function. This option # is only used in the `legacy` retry mode. # # @option options [Symbol] :retry_jitter (:none) # A delay randomiser function used by the default backoff function. # Some predefined functions can be referenced by name - :none, :equal, :full, # otherwise a Proc that takes and returns a number. This option is only used # in the `legacy` retry mode. # # @see https://www.awsarchitectureblog.com/2015/03/backoff.html # # @option options [Integer] :retry_limit (3) # The maximum number of times to retry failed requests. Only # ~ 500 level server errors and certain ~ 400 level client errors # are retried. Generally, these are throttling errors, data # checksum errors, networking errors, timeout errors, auth errors, # endpoint discovery, and errors from expired credentials. # This option is only used in the `legacy` retry mode. # # @option options [Integer] :retry_max_delay (0) # The maximum number of seconds to delay between retries (0 for no limit) # used by the default backoff function. This option is only used in the # `legacy` retry mode. # # @option options [String] :retry_mode ("legacy") # Specifies which retry algorithm to use. Values are: # # * `legacy` - The pre-existing retry behavior. This is default value if # no retry mode is provided. # # * `standard` - A standardized set of retry rules across the AWS SDKs. # This includes support for retry quotas, which limit the number of # unsuccessful retries a client can make. # # * `adaptive` - An experimental retry mode that includes all the # functionality of `standard` mode along with automatic client side # throttling. This is a provisional mode that may change behavior # in the future. # # # @option options [String] :sdk_ua_app_id # A unique and opaque application ID that is appended to the # User-Agent header as app/. It should have a # maximum length of 50. # # @option options [String] :secret_access_key # # @option options [String] :session_token # # @option options [Boolean] :stub_responses (false) # Causes the client to return stubbed responses. By default # fake responses are generated and returned. You can specify # the response data to return or errors to raise by calling # {ClientStubs#stub_responses}. See {ClientStubs} for more information. # # ** Please note ** When response stubbing is enabled, no HTTP # requests are made, and retries are disabled. # # @option options [Aws::TokenProvider] :token_provider # A Bearer Token Provider. This can be an instance of any one of the # following classes: # # * `Aws::StaticTokenProvider` - Used for configuring static, non-refreshing # tokens. # # * `Aws::SSOTokenProvider` - Used for loading tokens from AWS SSO using an # access token generated from `aws login`. # # When `:token_provider` is not configured directly, the `Aws::TokenProviderChain` # will be used to search for tokens configured for your profile in shared configuration files. # # @option options [Boolean] :use_dualstack_endpoint # When set to `true`, dualstack enabled endpoints (with `.aws` TLD) # will be used if available. # # @option options [Boolean] :use_fips_endpoint # When set to `true`, fips compatible endpoints will be used if available. # When a `fips` region is used, the region is normalized and this config # is set to `true`. # # @option options [Boolean] :validate_params (true) # When `true`, request parameters are validated before # sending the request. # # @option options [Aws::Omics::EndpointProvider] :endpoint_provider # The endpoint provider used to resolve endpoints. Any object that responds to `#resolve_endpoint(parameters)` where `parameters` is a Struct similar to `Aws::Omics::EndpointParameters` # # @option options [Float] :http_continue_timeout (1) # The number of seconds to wait for a 100-continue response before sending the # request body. This option has no effect unless the request has "Expect" # header set to "100-continue". Defaults to `nil` which disables this # behaviour. This value can safely be set per request on the session. # # @option options [Float] :http_idle_timeout (5) # The number of seconds a connection is allowed to sit idle before it # is considered stale. Stale connections are closed and removed from the # pool before making a request. # # @option options [Float] :http_open_timeout (15) # The default number of seconds to wait for response data. # This value can safely be set per-request on the session. # # @option options [URI::HTTP,String] :http_proxy # A proxy to send requests through. Formatted like 'http://proxy.com:123'. # # @option options [Float] :http_read_timeout (60) # The default number of seconds to wait for response data. # This value can safely be set per-request on the session. # # @option options [Boolean] :http_wire_trace (false) # When `true`, HTTP debug output will be sent to the `:logger`. # # @option options [Proc] :on_chunk_received # When a Proc object is provided, it will be used as callback when each chunk # of the response body is received. It provides three arguments: the chunk, # the number of bytes received, and the total number of # bytes in the response (or nil if the server did not send a `content-length`). # # @option options [Proc] :on_chunk_sent # When a Proc object is provided, it will be used as callback when each chunk # of the request body is sent. It provides three arguments: the chunk, # the number of bytes read from the body, and the total number of # bytes in the body. # # @option options [Boolean] :raise_response_errors (true) # When `true`, response errors are raised. # # @option options [String] :ssl_ca_bundle # Full path to the SSL certificate authority bundle file that should be used when # verifying peer certificates. If you do not pass `:ssl_ca_bundle` or # `:ssl_ca_directory` the the system default will be used if available. # # @option options [String] :ssl_ca_directory # Full path of the directory that contains the unbundled SSL certificate # authority files for verifying peer certificates. If you do # not pass `:ssl_ca_bundle` or `:ssl_ca_directory` the the system # default will be used if available. # # @option options [String] :ssl_ca_store # Sets the X509::Store to verify peer certificate. # # @option options [Float] :ssl_timeout # Sets the SSL timeout in seconds # # @option options [Boolean] :ssl_verify_peer (true) # When `true`, SSL peer certificates are verified when establishing a connection. # def initialize(*args) super end # @!group API Operations # Stops a multipart upload. # # @option params [required, String] :sequence_store_id # The sequence store ID for the store involved in the multipart upload. # # @option params [required, String] :upload_id # The ID for the multipart upload. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.abort_multipart_read_set_upload({ # sequence_store_id: "SequenceStoreId", # required # upload_id: "UploadId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/AbortMultipartReadSetUpload AWS API Documentation # # @overload abort_multipart_read_set_upload(params = {}) # @param [Hash] params ({}) def abort_multipart_read_set_upload(params = {}, options = {}) req = build_request(:abort_multipart_read_set_upload, params) req.send_request(options) end # Accept a resource share request. # # @option params [required, String] :share_id # The ID of the resource share. # # @return [Types::AcceptShareResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::AcceptShareResponse#status #status} => String # # @example Request syntax with placeholder values # # resp = client.accept_share({ # share_id: "String", # required # }) # # @example Response structure # # resp.status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED" # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/AcceptShare AWS API Documentation # # @overload accept_share(params = {}) # @param [Hash] params ({}) def accept_share(params = {}, options = {}) req = build_request(:accept_share, params) req.send_request(options) end # Deletes one or more read sets. # # @option params [required, Array] :ids # The read sets' IDs. # # @option params [required, String] :sequence_store_id # The read sets' sequence store ID. # # @return [Types::BatchDeleteReadSetResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::BatchDeleteReadSetResponse#errors #errors} => Array<Types::ReadSetBatchError> # # @example Request syntax with placeholder values # # resp = client.batch_delete_read_set({ # ids: ["ReadSetId"], # required # sequence_store_id: "SequenceStoreId", # required # }) # # @example Response structure # # resp.errors #=> Array # resp.errors[0].id #=> String # resp.errors[0].code #=> String # resp.errors[0].message #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/BatchDeleteReadSet AWS API Documentation # # @overload batch_delete_read_set(params = {}) # @param [Hash] params ({}) def batch_delete_read_set(params = {}, options = {}) req = build_request(:batch_delete_read_set, params) req.send_request(options) end # Cancels an annotation import job. # # @option params [required, String] :job_id # The job's ID. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.cancel_annotation_import_job({ # job_id: "ResourceId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CancelAnnotationImportJob AWS API Documentation # # @overload cancel_annotation_import_job(params = {}) # @param [Hash] params ({}) def cancel_annotation_import_job(params = {}, options = {}) req = build_request(:cancel_annotation_import_job, params) req.send_request(options) end # Cancels a run. # # @option params [required, String] :id # The run's ID. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.cancel_run({ # id: "RunId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CancelRun AWS API Documentation # # @overload cancel_run(params = {}) # @param [Hash] params ({}) def cancel_run(params = {}, options = {}) req = build_request(:cancel_run, params) req.send_request(options) end # Cancels a variant import job. # # @option params [required, String] :job_id # The job's ID. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.cancel_variant_import_job({ # job_id: "ResourceId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CancelVariantImportJob AWS API Documentation # # @overload cancel_variant_import_job(params = {}) # @param [Hash] params ({}) def cancel_variant_import_job(params = {}, options = {}) req = build_request(:cancel_variant_import_job, params) req.send_request(options) end # Concludes a multipart upload once you have uploaded all the # components. # # @option params [required, String] :sequence_store_id # The sequence store ID for the store involved in the multipart upload. # # @option params [required, String] :upload_id # The ID for the multipart upload. # # @option params [required, Array] :parts # The individual uploads or parts of a multipart upload. # # @return [Types::CompleteMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CompleteMultipartReadSetUploadResponse#read_set_id #read_set_id} => String # # @example Request syntax with placeholder values # # resp = client.complete_multipart_read_set_upload({ # sequence_store_id: "SequenceStoreId", # required # upload_id: "UploadId", # required # parts: [ # required # { # part_number: 1, # required # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2 # checksum: "CompleteReadSetUploadPartListItemChecksumString", # required # }, # ], # }) # # @example Response structure # # resp.read_set_id #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CompleteMultipartReadSetUpload AWS API Documentation # # @overload complete_multipart_read_set_upload(params = {}) # @param [Hash] params ({}) def complete_multipart_read_set_upload(params = {}, options = {}) req = build_request(:complete_multipart_read_set_upload, params) req.send_request(options) end # Creates an annotation store. # # @option params [Types::ReferenceItem] :reference # The genome reference for the store's annotations. # # @option params [String] :name # A name for the store. # # @option params [String] :description # A description for the store. # # @option params [Hash] :tags # Tags for the store. # # @option params [String] :version_name # The name given to an annotation store version to distinguish it from # other versions. # # @option params [Types::SseConfig] :sse_config # Server-side encryption (SSE) settings for the store. # # @option params [required, String] :store_format # The annotation file format of the store. # # @option params [Types::StoreOptions] :store_options # File parsing options for the annotation store. # # @return [Types::CreateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CreateAnnotationStoreResponse#id #id} => String # * {Types::CreateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem # * {Types::CreateAnnotationStoreResponse#store_format #store_format} => String # * {Types::CreateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions # * {Types::CreateAnnotationStoreResponse#status #status} => String # * {Types::CreateAnnotationStoreResponse#name #name} => String # * {Types::CreateAnnotationStoreResponse#version_name #version_name} => String # * {Types::CreateAnnotationStoreResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.create_annotation_store({ # reference: { # reference_arn: "ReferenceArn", # }, # name: "StoreName", # description: "Description", # tags: { # "TagKey" => "TagValue", # }, # version_name: "VersionName", # sse_config: { # type: "KMS", # required, accepts KMS # key_arn: "SseConfigKeyArnString", # }, # store_format: "GFF", # required, accepts GFF, TSV, VCF # store_options: { # tsv_store_options: { # annotation_type: "GENERIC", # accepts GENERIC, CHR_POS, CHR_POS_REF_ALT, CHR_START_END_ONE_BASE, CHR_START_END_REF_ALT_ONE_BASE, CHR_START_END_ZERO_BASE, CHR_START_END_REF_ALT_ZERO_BASE # format_to_header: { # "CHR" => "FormatToHeaderValueString", # }, # schema: [ # { # "SchemaItemKeyString" => "LONG", # accepts LONG, INT, STRING, FLOAT, DOUBLE, BOOLEAN # }, # ], # }, # }, # }) # # @example Response structure # # resp.id #=> String # resp.reference.reference_arn #=> String # resp.store_format #=> String, one of "GFF", "TSV", "VCF" # resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE" # resp.store_options.tsv_store_options.format_to_header #=> Hash # resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String # resp.store_options.tsv_store_options.schema #=> Array # resp.store_options.tsv_store_options.schema[0] #=> Hash # resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN" # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.name #=> String # resp.version_name #=> String # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStore AWS API Documentation # # @overload create_annotation_store(params = {}) # @param [Hash] params ({}) def create_annotation_store(params = {}, options = {}) req = build_request(:create_annotation_store, params) req.send_request(options) end # Creates a new version of an annotation store. # # @option params [required, String] :name # The name of an annotation store version from which versions are being # created. # # @option params [required, String] :version_name # The name given to an annotation store version to distinguish it from # other versions. # # @option params [String] :description # The description of an annotation store version. # # @option params [Types::VersionOptions] :version_options # The options for an annotation store version. # # @option params [Hash] :tags # Any tags added to annotation store version. # # @return [Types::CreateAnnotationStoreVersionResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CreateAnnotationStoreVersionResponse#id #id} => String # * {Types::CreateAnnotationStoreVersionResponse#version_name #version_name} => String # * {Types::CreateAnnotationStoreVersionResponse#store_id #store_id} => String # * {Types::CreateAnnotationStoreVersionResponse#version_options #version_options} => Types::VersionOptions # * {Types::CreateAnnotationStoreVersionResponse#name #name} => String # * {Types::CreateAnnotationStoreVersionResponse#status #status} => String # * {Types::CreateAnnotationStoreVersionResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.create_annotation_store_version({ # name: "StoreName", # required # version_name: "VersionName", # required # description: "Description", # version_options: { # tsv_version_options: { # annotation_type: "GENERIC", # accepts GENERIC, CHR_POS, CHR_POS_REF_ALT, CHR_START_END_ONE_BASE, CHR_START_END_REF_ALT_ONE_BASE, CHR_START_END_ZERO_BASE, CHR_START_END_REF_ALT_ZERO_BASE # format_to_header: { # "CHR" => "FormatToHeaderValueString", # }, # schema: [ # { # "SchemaItemKeyString" => "LONG", # accepts LONG, INT, STRING, FLOAT, DOUBLE, BOOLEAN # }, # ], # }, # }, # tags: { # "TagKey" => "TagValue", # }, # }) # # @example Response structure # # resp.id #=> String # resp.version_name #=> String # resp.store_id #=> String # resp.version_options.tsv_version_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE" # resp.version_options.tsv_version_options.format_to_header #=> Hash # resp.version_options.tsv_version_options.format_to_header["FormatToHeaderKey"] #=> String # resp.version_options.tsv_version_options.schema #=> Array # resp.version_options.tsv_version_options.schema[0] #=> Hash # resp.version_options.tsv_version_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN" # resp.name #=> String # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateAnnotationStoreVersion AWS API Documentation # # @overload create_annotation_store_version(params = {}) # @param [Hash] params ({}) def create_annotation_store_version(params = {}, options = {}) req = build_request(:create_annotation_store_version, params) req.send_request(options) end # Begins a multipart read set upload. # # @option params [required, String] :sequence_store_id # The sequence store ID for the store that is the destination of the # multipart uploads. # # @option params [String] :client_token # An idempotency token that can be used to avoid triggering multiple # multipart uploads. # # @option params [required, String] :source_file_type # The type of file being uploaded. # # @option params [required, String] :subject_id # The source's subject ID. # # @option params [required, String] :sample_id # The source's sample ID. # # @option params [String] :generated_from # Where the source originated. # # @option params [String] :reference_arn # The ARN of the reference. # # @option params [required, String] :name # The name of the read set. # # @option params [String] :description # The description of the read set. # # @option params [Hash] :tags # Any tags to add to the read set. # # @return [Types::CreateMultipartReadSetUploadResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CreateMultipartReadSetUploadResponse#sequence_store_id #sequence_store_id} => String # * {Types::CreateMultipartReadSetUploadResponse#upload_id #upload_id} => String # * {Types::CreateMultipartReadSetUploadResponse#source_file_type #source_file_type} => String # * {Types::CreateMultipartReadSetUploadResponse#subject_id #subject_id} => String # * {Types::CreateMultipartReadSetUploadResponse#sample_id #sample_id} => String # * {Types::CreateMultipartReadSetUploadResponse#generated_from #generated_from} => String # * {Types::CreateMultipartReadSetUploadResponse#reference_arn #reference_arn} => String # * {Types::CreateMultipartReadSetUploadResponse#name #name} => String # * {Types::CreateMultipartReadSetUploadResponse#description #description} => String # * {Types::CreateMultipartReadSetUploadResponse#tags #tags} => Hash<String,String> # * {Types::CreateMultipartReadSetUploadResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.create_multipart_read_set_upload({ # sequence_store_id: "SequenceStoreId", # required # client_token: "ClientToken", # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM, UBAM # subject_id: "SubjectId", # required # sample_id: "SampleId", # required # generated_from: "GeneratedFrom", # reference_arn: "ReferenceArn", # name: "ReadSetName", # required # description: "ReadSetDescription", # tags: { # "TagKey" => "TagValue", # }, # }) # # @example Response structure # # resp.sequence_store_id #=> String # resp.upload_id #=> String # resp.source_file_type #=> String, one of "FASTQ", "BAM", "CRAM", "UBAM" # resp.subject_id #=> String # resp.sample_id #=> String # resp.generated_from #=> String # resp.reference_arn #=> String # resp.name #=> String # resp.description #=> String # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateMultipartReadSetUpload AWS API Documentation # # @overload create_multipart_read_set_upload(params = {}) # @param [Hash] params ({}) def create_multipart_read_set_upload(params = {}, options = {}) req = build_request(:create_multipart_read_set_upload, params) req.send_request(options) end # Creates a reference store. # # @option params [required, String] :name # A name for the store. # # @option params [String] :description # A description for the store. # # @option params [Types::SseConfig] :sse_config # Server-side encryption (SSE) settings for the store. # # @option params [Hash] :tags # Tags for the store. # # @option params [String] :client_token # To ensure that requests don't run multiple times, specify a unique # token for each request. # # @return [Types::CreateReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CreateReferenceStoreResponse#id #id} => String # * {Types::CreateReferenceStoreResponse#arn #arn} => String # * {Types::CreateReferenceStoreResponse#name #name} => String # * {Types::CreateReferenceStoreResponse#description #description} => String # * {Types::CreateReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig # * {Types::CreateReferenceStoreResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.create_reference_store({ # name: "ReferenceStoreName", # required # description: "ReferenceStoreDescription", # sse_config: { # type: "KMS", # required, accepts KMS # key_arn: "SseConfigKeyArnString", # }, # tags: { # "TagKey" => "TagValue", # }, # client_token: "ClientToken", # }) # # @example Response structure # # resp.id #=> String # resp.arn #=> String # resp.name #=> String # resp.description #=> String # resp.sse_config.type #=> String, one of "KMS" # resp.sse_config.key_arn #=> String # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateReferenceStore AWS API Documentation # # @overload create_reference_store(params = {}) # @param [Hash] params ({}) def create_reference_store(params = {}, options = {}) req = build_request(:create_reference_store, params) req.send_request(options) end # Creates a run group. # # @option params [String] :name # A name for the group. # # @option params [Integer] :max_cpus # The maximum number of CPUs to use in the group. # # @option params [Integer] :max_runs # The maximum number of concurrent runs for the group. # # @option params [Integer] :max_duration # A maximum run time for the group in minutes. # # @option params [Hash] :tags # Tags for the group. # # @option params [required, String] :request_id # To ensure that requests don't run multiple times, specify a unique ID # for each request. # # **A suitable default value is auto-generated.** You should normally # not need to pass this option.** # # @option params [Integer] :max_gpus # The maximum GPUs that can be used by a run group. # # @return [Types::CreateRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CreateRunGroupResponse#arn #arn} => String # * {Types::CreateRunGroupResponse#id #id} => String # * {Types::CreateRunGroupResponse#tags #tags} => Hash<String,String> # # @example Request syntax with placeholder values # # resp = client.create_run_group({ # name: "RunGroupName", # max_cpus: 1, # max_runs: 1, # max_duration: 1, # tags: { # "TagKey" => "TagValue", # }, # request_id: "RunGroupRequestId", # required # max_gpus: 1, # }) # # @example Response structure # # resp.arn #=> String # resp.id #=> String # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateRunGroup AWS API Documentation # # @overload create_run_group(params = {}) # @param [Hash] params ({}) def create_run_group(params = {}, options = {}) req = build_request(:create_run_group, params) req.send_request(options) end # Creates a sequence store. # # @option params [required, String] :name # A name for the store. # # @option params [String] :description # A description for the store. # # @option params [Types::SseConfig] :sse_config # Server-side encryption (SSE) settings for the store. # # @option params [Hash] :tags # Tags for the store. # # @option params [String] :client_token # To ensure that requests don't run multiple times, specify a unique # token for each request. # # @option params [String] :fallback_location # An S3 location that is used to store files that have failed a direct # upload. # # @option params [String] :e_tag_algorithm_family # The ETag algorithm family to use for ingested read sets. # # @return [Types::CreateSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CreateSequenceStoreResponse#id #id} => String # * {Types::CreateSequenceStoreResponse#arn #arn} => String # * {Types::CreateSequenceStoreResponse#name #name} => String # * {Types::CreateSequenceStoreResponse#description #description} => String # * {Types::CreateSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig # * {Types::CreateSequenceStoreResponse#creation_time #creation_time} => Time # * {Types::CreateSequenceStoreResponse#fallback_location #fallback_location} => String # * {Types::CreateSequenceStoreResponse#e_tag_algorithm_family #e_tag_algorithm_family} => String # # @example Request syntax with placeholder values # # resp = client.create_sequence_store({ # name: "SequenceStoreName", # required # description: "SequenceStoreDescription", # sse_config: { # type: "KMS", # required, accepts KMS # key_arn: "SseConfigKeyArnString", # }, # tags: { # "TagKey" => "TagValue", # }, # client_token: "ClientToken", # fallback_location: "S3Destination", # e_tag_algorithm_family: "MD5up", # accepts MD5up, SHA256up, SHA512up # }) # # @example Response structure # # resp.id #=> String # resp.arn #=> String # resp.name #=> String # resp.description #=> String # resp.sse_config.type #=> String, one of "KMS" # resp.sse_config.key_arn #=> String # resp.creation_time #=> Time # resp.fallback_location #=> String # resp.e_tag_algorithm_family #=> String, one of "MD5up", "SHA256up", "SHA512up" # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateSequenceStore AWS API Documentation # # @overload create_sequence_store(params = {}) # @param [Hash] params ({}) def create_sequence_store(params = {}, options = {}) req = build_request(:create_sequence_store, params) req.send_request(options) end # Creates a cross-account shared resource. The resource owner makes an # offer to share the resource with the principal subscriber (an AWS user # with a different account than the resource owner). # # The following resources support cross-account sharing: # # * Healthomics variant stores # # * Healthomics annotation stores # # * Private workflows # # @option params [required, String] :resource_arn # The ARN of the resource to be shared. # # @option params [required, String] :principal_subscriber # The principal subscriber is the account being offered shared access to # the resource. # # @option params [String] :share_name # A name that the owner defines for the share. # # @return [Types::CreateShareResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CreateShareResponse#share_id #share_id} => String # * {Types::CreateShareResponse#status #status} => String # * {Types::CreateShareResponse#share_name #share_name} => String # # @example Request syntax with placeholder values # # resp = client.create_share({ # resource_arn: "String", # required # principal_subscriber: "String", # required # share_name: "ShareName", # }) # # @example Response structure # # resp.share_id #=> String # resp.status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED" # resp.share_name #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateShare AWS API Documentation # # @overload create_share(params = {}) # @param [Hash] params ({}) def create_share(params = {}, options = {}) req = build_request(:create_share, params) req.send_request(options) end # Creates a variant store. # # @option params [required, Types::ReferenceItem] :reference # The genome reference for the store's variants. # # @option params [String] :name # A name for the store. # # @option params [String] :description # A description for the store. # # @option params [Hash] :tags # Tags for the store. # # @option params [Types::SseConfig] :sse_config # Server-side encryption (SSE) settings for the store. # # @return [Types::CreateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CreateVariantStoreResponse#id #id} => String # * {Types::CreateVariantStoreResponse#reference #reference} => Types::ReferenceItem # * {Types::CreateVariantStoreResponse#status #status} => String # * {Types::CreateVariantStoreResponse#name #name} => String # * {Types::CreateVariantStoreResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.create_variant_store({ # reference: { # required # reference_arn: "ReferenceArn", # }, # name: "StoreName", # description: "Description", # tags: { # "TagKey" => "TagValue", # }, # sse_config: { # type: "KMS", # required, accepts KMS # key_arn: "SseConfigKeyArnString", # }, # }) # # @example Response structure # # resp.id #=> String # resp.reference.reference_arn #=> String # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.name #=> String # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateVariantStore AWS API Documentation # # @overload create_variant_store(params = {}) # @param [Hash] params ({}) def create_variant_store(params = {}, options = {}) req = build_request(:create_variant_store, params) req.send_request(options) end # Creates a workflow. # # @option params [String] :name # A name for the workflow. # # @option params [String] :description # A description for the workflow. # # @option params [String] :engine # An engine for the workflow. # # @option params [String, StringIO, File] :definition_zip # A ZIP archive for the workflow. # # @option params [String] :definition_uri # The URI of a definition for the workflow. # # @option params [String] :main # The path of the main definition file for the workflow. # # @option params [Hash] :parameter_template # A parameter template for the workflow. # # @option params [Integer] :storage_capacity # The storage capacity for the workflow in gibibytes. # # @option params [Hash] :tags # Tags for the workflow. # # @option params [required, String] :request_id # To ensure that requests don't run multiple times, specify a unique ID # for each request. # # **A suitable default value is auto-generated.** You should normally # not need to pass this option.** # # @option params [String] :accelerators # The computational accelerator specified to run the workflow. # # @return [Types::CreateWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::CreateWorkflowResponse#arn #arn} => String # * {Types::CreateWorkflowResponse#id #id} => String # * {Types::CreateWorkflowResponse#status #status} => String # * {Types::CreateWorkflowResponse#tags #tags} => Hash<String,String> # # @example Request syntax with placeholder values # # resp = client.create_workflow({ # name: "WorkflowName", # description: "WorkflowDescription", # engine: "WDL", # accepts WDL, NEXTFLOW, CWL # definition_zip: "data", # definition_uri: "WorkflowDefinition", # main: "WorkflowMain", # parameter_template: { # "WorkflowParameterName" => { # description: "WorkflowParameterDescription", # optional: false, # }, # }, # storage_capacity: 1, # tags: { # "TagKey" => "TagValue", # }, # request_id: "WorkflowRequestId", # required # accelerators: "GPU", # accepts GPU # }) # # @example Response structure # # resp.arn #=> String # resp.id #=> String # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE" # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/CreateWorkflow AWS API Documentation # # @overload create_workflow(params = {}) # @param [Hash] params ({}) def create_workflow(params = {}, options = {}) req = build_request(:create_workflow, params) req.send_request(options) end # Deletes an annotation store. # # @option params [required, String] :name # The store's name. # # @option params [Boolean] :force # Whether to force deletion. # # @return [Types::DeleteAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::DeleteAnnotationStoreResponse#status #status} => String # # @example Request syntax with placeholder values # # resp = client.delete_annotation_store({ # name: "String", # required # force: false, # }) # # @example Response structure # # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteAnnotationStore AWS API Documentation # # @overload delete_annotation_store(params = {}) # @param [Hash] params ({}) def delete_annotation_store(params = {}, options = {}) req = build_request(:delete_annotation_store, params) req.send_request(options) end # Deletes one or multiple versions of an annotation store. # # @option params [required, String] :name # The name of the annotation store from which versions are being # deleted. # # @option params [required, Array] :versions # The versions of an annotation store to be deleted. # # @option params [Boolean] :force # Forces the deletion of an annotation store version when imports are # in-progress.. # # @return [Types::DeleteAnnotationStoreVersionsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::DeleteAnnotationStoreVersionsResponse#errors #errors} => Array<Types::VersionDeleteError> # # @example Request syntax with placeholder values # # resp = client.delete_annotation_store_versions({ # name: "String", # required # versions: ["VersionName"], # required # force: false, # }) # # @example Response structure # # resp.errors #=> Array # resp.errors[0].version_name #=> String # resp.errors[0].message #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteAnnotationStoreVersions AWS API Documentation # # @overload delete_annotation_store_versions(params = {}) # @param [Hash] params ({}) def delete_annotation_store_versions(params = {}, options = {}) req = build_request(:delete_annotation_store_versions, params) req.send_request(options) end # Deletes a genome reference. # # @option params [required, String] :id # The reference's ID. # # @option params [required, String] :reference_store_id # The reference's store ID. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.delete_reference({ # id: "ReferenceId", # required # reference_store_id: "ReferenceStoreId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteReference AWS API Documentation # # @overload delete_reference(params = {}) # @param [Hash] params ({}) def delete_reference(params = {}, options = {}) req = build_request(:delete_reference, params) req.send_request(options) end # Deletes a genome reference store. # # @option params [required, String] :id # The store's ID. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.delete_reference_store({ # id: "ReferenceStoreId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteReferenceStore AWS API Documentation # # @overload delete_reference_store(params = {}) # @param [Hash] params ({}) def delete_reference_store(params = {}, options = {}) req = build_request(:delete_reference_store, params) req.send_request(options) end # Deletes a workflow run. # # @option params [required, String] :id # The run's ID. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.delete_run({ # id: "RunId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteRun AWS API Documentation # # @overload delete_run(params = {}) # @param [Hash] params ({}) def delete_run(params = {}, options = {}) req = build_request(:delete_run, params) req.send_request(options) end # Deletes a workflow run group. # # @option params [required, String] :id # The run group's ID. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.delete_run_group({ # id: "RunGroupId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteRunGroup AWS API Documentation # # @overload delete_run_group(params = {}) # @param [Hash] params ({}) def delete_run_group(params = {}, options = {}) req = build_request(:delete_run_group, params) req.send_request(options) end # Deletes a sequence store. # # @option params [required, String] :id # The sequence store's ID. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.delete_sequence_store({ # id: "SequenceStoreId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteSequenceStore AWS API Documentation # # @overload delete_sequence_store(params = {}) # @param [Hash] params ({}) def delete_sequence_store(params = {}, options = {}) req = build_request(:delete_sequence_store, params) req.send_request(options) end # Deletes a resource share. If you are the resource owner, the # subscriber will no longer have access to the shared resource. If you # are the subscriber, this operation deletes your access to the share. # # @option params [required, String] :share_id # The ID for the resource share to be deleted. # # @return [Types::DeleteShareResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::DeleteShareResponse#status #status} => String # # @example Request syntax with placeholder values # # resp = client.delete_share({ # share_id: "String", # required # }) # # @example Response structure # # resp.status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED" # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteShare AWS API Documentation # # @overload delete_share(params = {}) # @param [Hash] params ({}) def delete_share(params = {}, options = {}) req = build_request(:delete_share, params) req.send_request(options) end # Deletes a variant store. # # @option params [required, String] :name # The store's name. # # @option params [Boolean] :force # Whether to force deletion. # # @return [Types::DeleteVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::DeleteVariantStoreResponse#status #status} => String # # @example Request syntax with placeholder values # # resp = client.delete_variant_store({ # name: "String", # required # force: false, # }) # # @example Response structure # # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteVariantStore AWS API Documentation # # @overload delete_variant_store(params = {}) # @param [Hash] params ({}) def delete_variant_store(params = {}, options = {}) req = build_request(:delete_variant_store, params) req.send_request(options) end # Deletes a workflow. # # @option params [required, String] :id # The workflow's ID. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.delete_workflow({ # id: "WorkflowId", # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/DeleteWorkflow AWS API Documentation # # @overload delete_workflow(params = {}) # @param [Hash] params ({}) def delete_workflow(params = {}, options = {}) req = build_request(:delete_workflow, params) req.send_request(options) end # Gets information about an annotation import job. # # @option params [required, String] :job_id # The job's ID. # # @return [Types::GetAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetAnnotationImportResponse#id #id} => String # * {Types::GetAnnotationImportResponse#destination_name #destination_name} => String # * {Types::GetAnnotationImportResponse#version_name #version_name} => String # * {Types::GetAnnotationImportResponse#role_arn #role_arn} => String # * {Types::GetAnnotationImportResponse#status #status} => String # * {Types::GetAnnotationImportResponse#status_message #status_message} => String # * {Types::GetAnnotationImportResponse#creation_time #creation_time} => Time # * {Types::GetAnnotationImportResponse#update_time #update_time} => Time # * {Types::GetAnnotationImportResponse#completion_time #completion_time} => Time # * {Types::GetAnnotationImportResponse#items #items} => Array<Types::AnnotationImportItemDetail> # * {Types::GetAnnotationImportResponse#run_left_normalization #run_left_normalization} => Boolean # * {Types::GetAnnotationImportResponse#format_options #format_options} => Types::FormatOptions # * {Types::GetAnnotationImportResponse#annotation_fields #annotation_fields} => Hash<String,String> # # @example Request syntax with placeholder values # # resp = client.get_annotation_import_job({ # job_id: "ResourceId", # required # }) # # @example Response structure # # resp.id #=> String # resp.destination_name #=> String # resp.version_name #=> String # resp.role_arn #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES" # resp.status_message #=> String # resp.creation_time #=> Time # resp.update_time #=> Time # resp.completion_time #=> Time # resp.items #=> Array # resp.items[0].source #=> String # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES" # resp.run_left_normalization #=> Boolean # resp.format_options.tsv_options.read_options.sep #=> String # resp.format_options.tsv_options.read_options.encoding #=> String # resp.format_options.tsv_options.read_options.quote #=> String # resp.format_options.tsv_options.read_options.quote_all #=> Boolean # resp.format_options.tsv_options.read_options.escape #=> String # resp.format_options.tsv_options.read_options.escape_quotes #=> Boolean # resp.format_options.tsv_options.read_options.comment #=> String # resp.format_options.tsv_options.read_options.header #=> Boolean # resp.format_options.tsv_options.read_options.line_sep #=> String # resp.format_options.vcf_options.ignore_qual_field #=> Boolean # resp.format_options.vcf_options.ignore_filter_field #=> Boolean # resp.annotation_fields #=> Hash # resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * annotation_import_job_created # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetAnnotationImportJob AWS API Documentation # # @overload get_annotation_import_job(params = {}) # @param [Hash] params ({}) def get_annotation_import_job(params = {}, options = {}) req = build_request(:get_annotation_import_job, params) req.send_request(options) end # Gets information about an annotation store. # # @option params [required, String] :name # The store's name. # # @return [Types::GetAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetAnnotationStoreResponse#id #id} => String # * {Types::GetAnnotationStoreResponse#reference #reference} => Types::ReferenceItem # * {Types::GetAnnotationStoreResponse#status #status} => String # * {Types::GetAnnotationStoreResponse#store_arn #store_arn} => String # * {Types::GetAnnotationStoreResponse#name #name} => String # * {Types::GetAnnotationStoreResponse#description #description} => String # * {Types::GetAnnotationStoreResponse#sse_config #sse_config} => Types::SseConfig # * {Types::GetAnnotationStoreResponse#creation_time #creation_time} => Time # * {Types::GetAnnotationStoreResponse#update_time #update_time} => Time # * {Types::GetAnnotationStoreResponse#tags #tags} => Hash<String,String> # * {Types::GetAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions # * {Types::GetAnnotationStoreResponse#store_format #store_format} => String # * {Types::GetAnnotationStoreResponse#status_message #status_message} => String # * {Types::GetAnnotationStoreResponse#store_size_bytes #store_size_bytes} => Integer # * {Types::GetAnnotationStoreResponse#num_versions #num_versions} => Integer # # @example Request syntax with placeholder values # # resp = client.get_annotation_store({ # name: "String", # required # }) # # @example Response structure # # resp.id #=> String # resp.reference.reference_arn #=> String # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.store_arn #=> String # resp.name #=> String # resp.description #=> String # resp.sse_config.type #=> String, one of "KMS" # resp.sse_config.key_arn #=> String # resp.creation_time #=> Time # resp.update_time #=> Time # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE" # resp.store_options.tsv_store_options.format_to_header #=> Hash # resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String # resp.store_options.tsv_store_options.schema #=> Array # resp.store_options.tsv_store_options.schema[0] #=> Hash # resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN" # resp.store_format #=> String, one of "GFF", "TSV", "VCF" # resp.status_message #=> String # resp.store_size_bytes #=> Integer # resp.num_versions #=> Integer # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * annotation_store_created # * annotation_store_deleted # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetAnnotationStore AWS API Documentation # # @overload get_annotation_store(params = {}) # @param [Hash] params ({}) def get_annotation_store(params = {}, options = {}) req = build_request(:get_annotation_store, params) req.send_request(options) end # Retrieves the metadata for an annotation store version. # # @option params [required, String] :name # The name given to an annotation store version to distinguish it from # others. # # @option params [required, String] :version_name # The name given to an annotation store version to distinguish it from # others. # # @return [Types::GetAnnotationStoreVersionResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetAnnotationStoreVersionResponse#store_id #store_id} => String # * {Types::GetAnnotationStoreVersionResponse#id #id} => String # * {Types::GetAnnotationStoreVersionResponse#status #status} => String # * {Types::GetAnnotationStoreVersionResponse#version_arn #version_arn} => String # * {Types::GetAnnotationStoreVersionResponse#name #name} => String # * {Types::GetAnnotationStoreVersionResponse#version_name #version_name} => String # * {Types::GetAnnotationStoreVersionResponse#description #description} => String # * {Types::GetAnnotationStoreVersionResponse#creation_time #creation_time} => Time # * {Types::GetAnnotationStoreVersionResponse#update_time #update_time} => Time # * {Types::GetAnnotationStoreVersionResponse#tags #tags} => Hash<String,String> # * {Types::GetAnnotationStoreVersionResponse#version_options #version_options} => Types::VersionOptions # * {Types::GetAnnotationStoreVersionResponse#status_message #status_message} => String # * {Types::GetAnnotationStoreVersionResponse#version_size_bytes #version_size_bytes} => Integer # # @example Request syntax with placeholder values # # resp = client.get_annotation_store_version({ # name: "String", # required # version_name: "String", # required # }) # # @example Response structure # # resp.store_id #=> String # resp.id #=> String # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.version_arn #=> String # resp.name #=> String # resp.version_name #=> String # resp.description #=> String # resp.creation_time #=> Time # resp.update_time #=> Time # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # resp.version_options.tsv_version_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE" # resp.version_options.tsv_version_options.format_to_header #=> Hash # resp.version_options.tsv_version_options.format_to_header["FormatToHeaderKey"] #=> String # resp.version_options.tsv_version_options.schema #=> Array # resp.version_options.tsv_version_options.schema[0] #=> Hash # resp.version_options.tsv_version_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN" # resp.status_message #=> String # resp.version_size_bytes #=> Integer # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * annotation_store_version_created # * annotation_store_version_deleted # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetAnnotationStoreVersion AWS API Documentation # # @overload get_annotation_store_version(params = {}) # @param [Hash] params ({}) def get_annotation_store_version(params = {}, options = {}) req = build_request(:get_annotation_store_version, params) req.send_request(options) end # Gets a file from a read set. # # @option params [required, String] :id # The read set's ID. # # @option params [required, String] :sequence_store_id # The read set's sequence store ID. # # @option params [String] :file # The file to retrieve. # # @option params [required, Integer] :part_number # The part number to retrieve. # # @return [Types::GetReadSetResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetReadSetResponse#payload #payload} => IO # # @example Request syntax with placeholder values # # resp = client.get_read_set({ # id: "ReadSetId", # required # sequence_store_id: "SequenceStoreId", # required # file: "SOURCE1", # accepts SOURCE1, SOURCE2, INDEX # part_number: 1, # required # }) # # @example Response structure # # resp.payload #=> IO # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSet AWS API Documentation # # @overload get_read_set(params = {}) # @param [Hash] params ({}) def get_read_set(params = {}, options = {}, &block) req = build_request(:get_read_set, params) req.send_request(options, &block) end # Gets information about a read set activation job. # # @option params [required, String] :id # The job's ID. # # @option params [required, String] :sequence_store_id # The job's sequence store ID. # # @return [Types::GetReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetReadSetActivationJobResponse#id #id} => String # * {Types::GetReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String # * {Types::GetReadSetActivationJobResponse#status #status} => String # * {Types::GetReadSetActivationJobResponse#status_message #status_message} => String # * {Types::GetReadSetActivationJobResponse#creation_time #creation_time} => Time # * {Types::GetReadSetActivationJobResponse#completion_time #completion_time} => Time # * {Types::GetReadSetActivationJobResponse#sources #sources} => Array<Types::ActivateReadSetSourceItem> # # @example Request syntax with placeholder values # # resp = client.get_read_set_activation_job({ # id: "ActivationJobId", # required # sequence_store_id: "SequenceStoreId", # required # }) # # @example Response structure # # resp.id #=> String # resp.sequence_store_id #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.status_message #=> String # resp.creation_time #=> Time # resp.completion_time #=> Time # resp.sources #=> Array # resp.sources[0].read_set_id #=> String # resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED" # resp.sources[0].status_message #=> String # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * read_set_activation_job_completed # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetActivationJob AWS API Documentation # # @overload get_read_set_activation_job(params = {}) # @param [Hash] params ({}) def get_read_set_activation_job(params = {}, options = {}) req = build_request(:get_read_set_activation_job, params) req.send_request(options) end # Gets information about a read set export job. # # @option params [required, String] :sequence_store_id # The job's sequence store ID. # # @option params [required, String] :id # The job's ID. # # @return [Types::GetReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetReadSetExportJobResponse#id #id} => String # * {Types::GetReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String # * {Types::GetReadSetExportJobResponse#destination #destination} => String # * {Types::GetReadSetExportJobResponse#status #status} => String # * {Types::GetReadSetExportJobResponse#status_message #status_message} => String # * {Types::GetReadSetExportJobResponse#creation_time #creation_time} => Time # * {Types::GetReadSetExportJobResponse#completion_time #completion_time} => Time # * {Types::GetReadSetExportJobResponse#read_sets #read_sets} => Array<Types::ExportReadSetDetail> # # @example Request syntax with placeholder values # # resp = client.get_read_set_export_job({ # sequence_store_id: "SequenceStoreId", # required # id: "ExportJobId", # required # }) # # @example Response structure # # resp.id #=> String # resp.sequence_store_id #=> String # resp.destination #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.status_message #=> String # resp.creation_time #=> Time # resp.completion_time #=> Time # resp.read_sets #=> Array # resp.read_sets[0].id #=> String # resp.read_sets[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED" # resp.read_sets[0].status_message #=> String # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * read_set_export_job_completed # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetExportJob AWS API Documentation # # @overload get_read_set_export_job(params = {}) # @param [Hash] params ({}) def get_read_set_export_job(params = {}, options = {}) req = build_request(:get_read_set_export_job, params) req.send_request(options) end # Gets information about a read set import job. # # @option params [required, String] :id # The job's ID. # # @option params [required, String] :sequence_store_id # The job's sequence store ID. # # @return [Types::GetReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetReadSetImportJobResponse#id #id} => String # * {Types::GetReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String # * {Types::GetReadSetImportJobResponse#role_arn #role_arn} => String # * {Types::GetReadSetImportJobResponse#status #status} => String # * {Types::GetReadSetImportJobResponse#status_message #status_message} => String # * {Types::GetReadSetImportJobResponse#creation_time #creation_time} => Time # * {Types::GetReadSetImportJobResponse#completion_time #completion_time} => Time # * {Types::GetReadSetImportJobResponse#sources #sources} => Array<Types::ImportReadSetSourceItem> # # @example Request syntax with placeholder values # # resp = client.get_read_set_import_job({ # id: "ImportJobId", # required # sequence_store_id: "SequenceStoreId", # required # }) # # @example Response structure # # resp.id #=> String # resp.sequence_store_id #=> String # resp.role_arn #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.status_message #=> String # resp.creation_time #=> Time # resp.completion_time #=> Time # resp.sources #=> Array # resp.sources[0].source_files.source1 #=> String # resp.sources[0].source_files.source2 #=> String # resp.sources[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM", "UBAM" # resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED" # resp.sources[0].status_message #=> String # resp.sources[0].subject_id #=> String # resp.sources[0].sample_id #=> String # resp.sources[0].generated_from #=> String # resp.sources[0].reference_arn #=> String # resp.sources[0].name #=> String # resp.sources[0].description #=> String # resp.sources[0].tags #=> Hash # resp.sources[0].tags["TagKey"] #=> String # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * read_set_import_job_completed # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetImportJob AWS API Documentation # # @overload get_read_set_import_job(params = {}) # @param [Hash] params ({}) def get_read_set_import_job(params = {}, options = {}) req = build_request(:get_read_set_import_job, params) req.send_request(options) end # Gets details about a read set. # # @option params [required, String] :id # The read set's ID. # # @option params [required, String] :sequence_store_id # The read set's sequence store ID. # # @return [Types::GetReadSetMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetReadSetMetadataResponse#id #id} => String # * {Types::GetReadSetMetadataResponse#arn #arn} => String # * {Types::GetReadSetMetadataResponse#sequence_store_id #sequence_store_id} => String # * {Types::GetReadSetMetadataResponse#subject_id #subject_id} => String # * {Types::GetReadSetMetadataResponse#sample_id #sample_id} => String # * {Types::GetReadSetMetadataResponse#status #status} => String # * {Types::GetReadSetMetadataResponse#name #name} => String # * {Types::GetReadSetMetadataResponse#description #description} => String # * {Types::GetReadSetMetadataResponse#file_type #file_type} => String # * {Types::GetReadSetMetadataResponse#creation_time #creation_time} => Time # * {Types::GetReadSetMetadataResponse#sequence_information #sequence_information} => Types::SequenceInformation # * {Types::GetReadSetMetadataResponse#reference_arn #reference_arn} => String # * {Types::GetReadSetMetadataResponse#files #files} => Types::ReadSetFiles # * {Types::GetReadSetMetadataResponse#status_message #status_message} => String # * {Types::GetReadSetMetadataResponse#creation_type #creation_type} => String # * {Types::GetReadSetMetadataResponse#etag #etag} => Types::ETag # # @example Request syntax with placeholder values # # resp = client.get_read_set_metadata({ # id: "ReadSetId", # required # sequence_store_id: "SequenceStoreId", # required # }) # # @example Response structure # # resp.id #=> String # resp.arn #=> String # resp.sequence_store_id #=> String # resp.subject_id #=> String # resp.sample_id #=> String # resp.status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED" # resp.name #=> String # resp.description #=> String # resp.file_type #=> String, one of "FASTQ", "BAM", "CRAM", "UBAM" # resp.creation_time #=> Time # resp.sequence_information.total_read_count #=> Integer # resp.sequence_information.total_base_count #=> Integer # resp.sequence_information.generated_from #=> String # resp.sequence_information.alignment #=> String # resp.reference_arn #=> String # resp.files.source1.total_parts #=> Integer # resp.files.source1.part_size #=> Integer # resp.files.source1.content_length #=> Integer # resp.files.source1.s3_access.s3_uri #=> String # resp.files.source2.total_parts #=> Integer # resp.files.source2.part_size #=> Integer # resp.files.source2.content_length #=> Integer # resp.files.source2.s3_access.s3_uri #=> String # resp.files.index.total_parts #=> Integer # resp.files.index.part_size #=> Integer # resp.files.index.content_length #=> Integer # resp.files.index.s3_access.s3_uri #=> String # resp.status_message #=> String # resp.creation_type #=> String, one of "IMPORT", "UPLOAD" # resp.etag.algorithm #=> String, one of "FASTQ_MD5up", "BAM_MD5up", "CRAM_MD5up", "FASTQ_SHA256up", "BAM_SHA256up", "CRAM_SHA256up", "FASTQ_SHA512up", "BAM_SHA512up", "CRAM_SHA512up" # resp.etag.source1 #=> String # resp.etag.source2 #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReadSetMetadata AWS API Documentation # # @overload get_read_set_metadata(params = {}) # @param [Hash] params ({}) def get_read_set_metadata(params = {}, options = {}) req = build_request(:get_read_set_metadata, params) req.send_request(options) end # Gets a reference file. # # @option params [required, String] :id # The reference's ID. # # @option params [required, String] :reference_store_id # The reference's store ID. # # @option params [String] :range # The range to retrieve. # # @option params [required, Integer] :part_number # The part number to retrieve. # # @option params [String] :file # The file to retrieve. # # @return [Types::GetReferenceResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetReferenceResponse#payload #payload} => IO # # @example Request syntax with placeholder values # # resp = client.get_reference({ # id: "ReferenceId", # required # reference_store_id: "ReferenceStoreId", # required # range: "Range", # part_number: 1, # required # file: "SOURCE", # accepts SOURCE, INDEX # }) # # @example Response structure # # resp.payload #=> IO # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReference AWS API Documentation # # @overload get_reference(params = {}) # @param [Hash] params ({}) def get_reference(params = {}, options = {}, &block) req = build_request(:get_reference, params) req.send_request(options, &block) end # Gets information about a reference import job. # # @option params [required, String] :id # The job's ID. # # @option params [required, String] :reference_store_id # The job's reference store ID. # # @return [Types::GetReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetReferenceImportJobResponse#id #id} => String # * {Types::GetReferenceImportJobResponse#reference_store_id #reference_store_id} => String # * {Types::GetReferenceImportJobResponse#role_arn #role_arn} => String # * {Types::GetReferenceImportJobResponse#status #status} => String # * {Types::GetReferenceImportJobResponse#status_message #status_message} => String # * {Types::GetReferenceImportJobResponse#creation_time #creation_time} => Time # * {Types::GetReferenceImportJobResponse#completion_time #completion_time} => Time # * {Types::GetReferenceImportJobResponse#sources #sources} => Array<Types::ImportReferenceSourceItem> # # @example Request syntax with placeholder values # # resp = client.get_reference_import_job({ # id: "ImportJobId", # required # reference_store_id: "ReferenceStoreId", # required # }) # # @example Response structure # # resp.id #=> String # resp.reference_store_id #=> String # resp.role_arn #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.status_message #=> String # resp.creation_time #=> Time # resp.completion_time #=> Time # resp.sources #=> Array # resp.sources[0].source_file #=> String # resp.sources[0].status #=> String, one of "NOT_STARTED", "IN_PROGRESS", "FINISHED", "FAILED" # resp.sources[0].status_message #=> String # resp.sources[0].name #=> String # resp.sources[0].description #=> String # resp.sources[0].tags #=> Hash # resp.sources[0].tags["TagKey"] #=> String # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * reference_import_job_completed # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceImportJob AWS API Documentation # # @overload get_reference_import_job(params = {}) # @param [Hash] params ({}) def get_reference_import_job(params = {}, options = {}) req = build_request(:get_reference_import_job, params) req.send_request(options) end # Gets information about a genome reference's metadata. # # @option params [required, String] :id # The reference's ID. # # @option params [required, String] :reference_store_id # The reference's reference store ID. # # @return [Types::GetReferenceMetadataResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetReferenceMetadataResponse#id #id} => String # * {Types::GetReferenceMetadataResponse#arn #arn} => String # * {Types::GetReferenceMetadataResponse#reference_store_id #reference_store_id} => String # * {Types::GetReferenceMetadataResponse#md5 #md5} => String # * {Types::GetReferenceMetadataResponse#status #status} => String # * {Types::GetReferenceMetadataResponse#name #name} => String # * {Types::GetReferenceMetadataResponse#description #description} => String # * {Types::GetReferenceMetadataResponse#creation_time #creation_time} => Time # * {Types::GetReferenceMetadataResponse#update_time #update_time} => Time # * {Types::GetReferenceMetadataResponse#files #files} => Types::ReferenceFiles # # @example Request syntax with placeholder values # # resp = client.get_reference_metadata({ # id: "ReferenceId", # required # reference_store_id: "ReferenceStoreId", # required # }) # # @example Response structure # # resp.id #=> String # resp.arn #=> String # resp.reference_store_id #=> String # resp.md5 #=> String # resp.status #=> String, one of "ACTIVE", "DELETING", "DELETED" # resp.name #=> String # resp.description #=> String # resp.creation_time #=> Time # resp.update_time #=> Time # resp.files.source.total_parts #=> Integer # resp.files.source.part_size #=> Integer # resp.files.source.content_length #=> Integer # resp.files.source.s3_access.s3_uri #=> String # resp.files.index.total_parts #=> Integer # resp.files.index.part_size #=> Integer # resp.files.index.content_length #=> Integer # resp.files.index.s3_access.s3_uri #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceMetadata AWS API Documentation # # @overload get_reference_metadata(params = {}) # @param [Hash] params ({}) def get_reference_metadata(params = {}, options = {}) req = build_request(:get_reference_metadata, params) req.send_request(options) end # Gets information about a reference store. # # @option params [required, String] :id # The store's ID. # # @return [Types::GetReferenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetReferenceStoreResponse#id #id} => String # * {Types::GetReferenceStoreResponse#arn #arn} => String # * {Types::GetReferenceStoreResponse#name #name} => String # * {Types::GetReferenceStoreResponse#description #description} => String # * {Types::GetReferenceStoreResponse#sse_config #sse_config} => Types::SseConfig # * {Types::GetReferenceStoreResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.get_reference_store({ # id: "ReferenceStoreId", # required # }) # # @example Response structure # # resp.id #=> String # resp.arn #=> String # resp.name #=> String # resp.description #=> String # resp.sse_config.type #=> String, one of "KMS" # resp.sse_config.key_arn #=> String # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetReferenceStore AWS API Documentation # # @overload get_reference_store(params = {}) # @param [Hash] params ({}) def get_reference_store(params = {}, options = {}) req = build_request(:get_reference_store, params) req.send_request(options) end # Gets information about a workflow run. # # If a workflow is shared with you, you cannot export information about # the run. # # @option params [required, String] :id # The run's ID. # # @option params [Array] :export # The run's export format. # # @return [Types::GetRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetRunResponse#arn #arn} => String # * {Types::GetRunResponse#id #id} => String # * {Types::GetRunResponse#status #status} => String # * {Types::GetRunResponse#workflow_id #workflow_id} => String # * {Types::GetRunResponse#workflow_type #workflow_type} => String # * {Types::GetRunResponse#run_id #run_id} => String # * {Types::GetRunResponse#role_arn #role_arn} => String # * {Types::GetRunResponse#name #name} => String # * {Types::GetRunResponse#run_group_id #run_group_id} => String # * {Types::GetRunResponse#priority #priority} => Integer # * {Types::GetRunResponse#definition #definition} => String # * {Types::GetRunResponse#digest #digest} => String # * {Types::GetRunResponse#parameters #parameters} => Hash,Array,String,Numeric,Boolean # * {Types::GetRunResponse#storage_capacity #storage_capacity} => Integer # * {Types::GetRunResponse#output_uri #output_uri} => String # * {Types::GetRunResponse#log_level #log_level} => String # * {Types::GetRunResponse#resource_digests #resource_digests} => Hash<String,String> # * {Types::GetRunResponse#started_by #started_by} => String # * {Types::GetRunResponse#creation_time #creation_time} => Time # * {Types::GetRunResponse#start_time #start_time} => Time # * {Types::GetRunResponse#stop_time #stop_time} => Time # * {Types::GetRunResponse#status_message #status_message} => String # * {Types::GetRunResponse#tags #tags} => Hash<String,String> # * {Types::GetRunResponse#accelerators #accelerators} => String # * {Types::GetRunResponse#retention_mode #retention_mode} => String # * {Types::GetRunResponse#failure_reason #failure_reason} => String # * {Types::GetRunResponse#log_location #log_location} => Types::RunLogLocation # * {Types::GetRunResponse#uuid #uuid} => String # * {Types::GetRunResponse#run_output_uri #run_output_uri} => String # * {Types::GetRunResponse#storage_type #storage_type} => String # * {Types::GetRunResponse#workflow_owner_id #workflow_owner_id} => String # # @example Request syntax with placeholder values # # resp = client.get_run({ # id: "RunId", # required # export: ["DEFINITION"], # accepts DEFINITION # }) # # @example Response structure # # resp.arn #=> String # resp.id #=> String # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED" # resp.workflow_id #=> String # resp.workflow_type #=> String, one of "PRIVATE", "READY2RUN" # resp.run_id #=> String # resp.role_arn #=> String # resp.name #=> String # resp.run_group_id #=> String # resp.priority #=> Integer # resp.definition #=> String # resp.digest #=> String # resp.storage_capacity #=> Integer # resp.output_uri #=> String # resp.log_level #=> String, one of "OFF", "FATAL", "ERROR", "ALL" # resp.resource_digests #=> Hash # resp.resource_digests["RunResourceDigestKey"] #=> String # resp.started_by #=> String # resp.creation_time #=> Time # resp.start_time #=> Time # resp.stop_time #=> Time # resp.status_message #=> String # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # resp.accelerators #=> String, one of "GPU" # resp.retention_mode #=> String, one of "RETAIN", "REMOVE" # resp.failure_reason #=> String # resp.log_location.engine_log_stream #=> String # resp.log_location.run_log_stream #=> String # resp.uuid #=> String # resp.run_output_uri #=> String # resp.storage_type #=> String, one of "STATIC", "DYNAMIC" # resp.workflow_owner_id #=> String # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * run_completed # * run_running # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRun AWS API Documentation # # @overload get_run(params = {}) # @param [Hash] params ({}) def get_run(params = {}, options = {}) req = build_request(:get_run, params) req.send_request(options) end # Gets information about a workflow run group. # # @option params [required, String] :id # The group's ID. # # @return [Types::GetRunGroupResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetRunGroupResponse#arn #arn} => String # * {Types::GetRunGroupResponse#id #id} => String # * {Types::GetRunGroupResponse#name #name} => String # * {Types::GetRunGroupResponse#max_cpus #max_cpus} => Integer # * {Types::GetRunGroupResponse#max_runs #max_runs} => Integer # * {Types::GetRunGroupResponse#max_duration #max_duration} => Integer # * {Types::GetRunGroupResponse#creation_time #creation_time} => Time # * {Types::GetRunGroupResponse#tags #tags} => Hash<String,String> # * {Types::GetRunGroupResponse#max_gpus #max_gpus} => Integer # # @example Request syntax with placeholder values # # resp = client.get_run_group({ # id: "RunGroupId", # required # }) # # @example Response structure # # resp.arn #=> String # resp.id #=> String # resp.name #=> String # resp.max_cpus #=> Integer # resp.max_runs #=> Integer # resp.max_duration #=> Integer # resp.creation_time #=> Time # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # resp.max_gpus #=> Integer # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunGroup AWS API Documentation # # @overload get_run_group(params = {}) # @param [Hash] params ({}) def get_run_group(params = {}, options = {}) req = build_request(:get_run_group, params) req.send_request(options) end # Gets information about a workflow run task. # # @option params [required, String] :id # The workflow run ID. # # @option params [required, String] :task_id # The task's ID. # # @return [Types::GetRunTaskResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetRunTaskResponse#task_id #task_id} => String # * {Types::GetRunTaskResponse#status #status} => String # * {Types::GetRunTaskResponse#name #name} => String # * {Types::GetRunTaskResponse#cpus #cpus} => Integer # * {Types::GetRunTaskResponse#memory #memory} => Integer # * {Types::GetRunTaskResponse#creation_time #creation_time} => Time # * {Types::GetRunTaskResponse#start_time #start_time} => Time # * {Types::GetRunTaskResponse#stop_time #stop_time} => Time # * {Types::GetRunTaskResponse#status_message #status_message} => String # * {Types::GetRunTaskResponse#log_stream #log_stream} => String # * {Types::GetRunTaskResponse#gpus #gpus} => Integer # * {Types::GetRunTaskResponse#instance_type #instance_type} => String # * {Types::GetRunTaskResponse#failure_reason #failure_reason} => String # # @example Request syntax with placeholder values # # resp = client.get_run_task({ # id: "RunId", # required # task_id: "TaskId", # required # }) # # @example Response structure # # resp.task_id #=> String # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED" # resp.name #=> String # resp.cpus #=> Integer # resp.memory #=> Integer # resp.creation_time #=> Time # resp.start_time #=> Time # resp.stop_time #=> Time # resp.status_message #=> String # resp.log_stream #=> String # resp.gpus #=> Integer # resp.instance_type #=> String # resp.failure_reason #=> String # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * task_completed # * task_running # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetRunTask AWS API Documentation # # @overload get_run_task(params = {}) # @param [Hash] params ({}) def get_run_task(params = {}, options = {}) req = build_request(:get_run_task, params) req.send_request(options) end # Gets information about a sequence store. # # @option params [required, String] :id # The store's ID. # # @return [Types::GetSequenceStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetSequenceStoreResponse#id #id} => String # * {Types::GetSequenceStoreResponse#arn #arn} => String # * {Types::GetSequenceStoreResponse#name #name} => String # * {Types::GetSequenceStoreResponse#description #description} => String # * {Types::GetSequenceStoreResponse#sse_config #sse_config} => Types::SseConfig # * {Types::GetSequenceStoreResponse#creation_time #creation_time} => Time # * {Types::GetSequenceStoreResponse#fallback_location #fallback_location} => String # * {Types::GetSequenceStoreResponse#s3_access #s3_access} => Types::SequenceStoreS3Access # * {Types::GetSequenceStoreResponse#e_tag_algorithm_family #e_tag_algorithm_family} => String # # @example Request syntax with placeholder values # # resp = client.get_sequence_store({ # id: "SequenceStoreId", # required # }) # # @example Response structure # # resp.id #=> String # resp.arn #=> String # resp.name #=> String # resp.description #=> String # resp.sse_config.type #=> String, one of "KMS" # resp.sse_config.key_arn #=> String # resp.creation_time #=> Time # resp.fallback_location #=> String # resp.s3_access.s3_uri #=> String # resp.s3_access.s3_access_point_arn #=> String # resp.e_tag_algorithm_family #=> String, one of "MD5up", "SHA256up", "SHA512up" # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetSequenceStore AWS API Documentation # # @overload get_sequence_store(params = {}) # @param [Hash] params ({}) def get_sequence_store(params = {}, options = {}) req = build_request(:get_sequence_store, params) req.send_request(options) end # Retrieves the metadata for the specified resource share. # # @option params [required, String] :share_id # The ID of the share. # # @return [Types::GetShareResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetShareResponse#share #share} => Types::ShareDetails # # @example Request syntax with placeholder values # # resp = client.get_share({ # share_id: "String", # required # }) # # @example Response structure # # resp.share.share_id #=> String # resp.share.resource_arn #=> String # resp.share.resource_id #=> String # resp.share.principal_subscriber #=> String # resp.share.owner_id #=> String # resp.share.status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED" # resp.share.status_message #=> String # resp.share.share_name #=> String # resp.share.creation_time #=> Time # resp.share.update_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetShare AWS API Documentation # # @overload get_share(params = {}) # @param [Hash] params ({}) def get_share(params = {}, options = {}) req = build_request(:get_share, params) req.send_request(options) end # Gets information about a variant import job. # # @option params [required, String] :job_id # The job's ID. # # @return [Types::GetVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetVariantImportResponse#id #id} => String # * {Types::GetVariantImportResponse#destination_name #destination_name} => String # * {Types::GetVariantImportResponse#role_arn #role_arn} => String # * {Types::GetVariantImportResponse#status #status} => String # * {Types::GetVariantImportResponse#status_message #status_message} => String # * {Types::GetVariantImportResponse#creation_time #creation_time} => Time # * {Types::GetVariantImportResponse#update_time #update_time} => Time # * {Types::GetVariantImportResponse#completion_time #completion_time} => Time # * {Types::GetVariantImportResponse#items #items} => Array<Types::VariantImportItemDetail> # * {Types::GetVariantImportResponse#run_left_normalization #run_left_normalization} => Boolean # * {Types::GetVariantImportResponse#annotation_fields #annotation_fields} => Hash<String,String> # # @example Request syntax with placeholder values # # resp = client.get_variant_import_job({ # job_id: "ResourceId", # required # }) # # @example Response structure # # resp.id #=> String # resp.destination_name #=> String # resp.role_arn #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES" # resp.status_message #=> String # resp.creation_time #=> Time # resp.update_time #=> Time # resp.completion_time #=> Time # resp.items #=> Array # resp.items[0].source #=> String # resp.items[0].job_status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES" # resp.items[0].status_message #=> String # resp.run_left_normalization #=> Boolean # resp.annotation_fields #=> Hash # resp.annotation_fields["AnnotationFieldMapKeyString"] #=> String # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * variant_import_job_created # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetVariantImportJob AWS API Documentation # # @overload get_variant_import_job(params = {}) # @param [Hash] params ({}) def get_variant_import_job(params = {}, options = {}) req = build_request(:get_variant_import_job, params) req.send_request(options) end # Gets information about a variant store. # # @option params [required, String] :name # The store's name. # # @return [Types::GetVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetVariantStoreResponse#id #id} => String # * {Types::GetVariantStoreResponse#reference #reference} => Types::ReferenceItem # * {Types::GetVariantStoreResponse#status #status} => String # * {Types::GetVariantStoreResponse#store_arn #store_arn} => String # * {Types::GetVariantStoreResponse#name #name} => String # * {Types::GetVariantStoreResponse#description #description} => String # * {Types::GetVariantStoreResponse#sse_config #sse_config} => Types::SseConfig # * {Types::GetVariantStoreResponse#creation_time #creation_time} => Time # * {Types::GetVariantStoreResponse#update_time #update_time} => Time # * {Types::GetVariantStoreResponse#tags #tags} => Hash<String,String> # * {Types::GetVariantStoreResponse#status_message #status_message} => String # * {Types::GetVariantStoreResponse#store_size_bytes #store_size_bytes} => Integer # # @example Request syntax with placeholder values # # resp = client.get_variant_store({ # name: "String", # required # }) # # @example Response structure # # resp.id #=> String # resp.reference.reference_arn #=> String # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.store_arn #=> String # resp.name #=> String # resp.description #=> String # resp.sse_config.type #=> String, one of "KMS" # resp.sse_config.key_arn #=> String # resp.creation_time #=> Time # resp.update_time #=> Time # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # resp.status_message #=> String # resp.store_size_bytes #=> Integer # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * variant_store_created # * variant_store_deleted # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetVariantStore AWS API Documentation # # @overload get_variant_store(params = {}) # @param [Hash] params ({}) def get_variant_store(params = {}, options = {}) req = build_request(:get_variant_store, params) req.send_request(options) end # Gets information about a workflow. # # If a workflow is shared with you, you cannot export the workflow. # # @option params [required, String] :id # The workflow's ID. # # @option params [String] :type # The workflow's type. # # @option params [Array] :export # The export format for the workflow. # # @option params [String] :workflow_owner_id # The ID of the workflow owner. # # @return [Types::GetWorkflowResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::GetWorkflowResponse#arn #arn} => String # * {Types::GetWorkflowResponse#id #id} => String # * {Types::GetWorkflowResponse#status #status} => String # * {Types::GetWorkflowResponse#type #type} => String # * {Types::GetWorkflowResponse#name #name} => String # * {Types::GetWorkflowResponse#description #description} => String # * {Types::GetWorkflowResponse#engine #engine} => String # * {Types::GetWorkflowResponse#definition #definition} => String # * {Types::GetWorkflowResponse#main #main} => String # * {Types::GetWorkflowResponse#digest #digest} => String # * {Types::GetWorkflowResponse#parameter_template #parameter_template} => Hash<String,Types::WorkflowParameter> # * {Types::GetWorkflowResponse#storage_capacity #storage_capacity} => Integer # * {Types::GetWorkflowResponse#creation_time #creation_time} => Time # * {Types::GetWorkflowResponse#status_message #status_message} => String # * {Types::GetWorkflowResponse#tags #tags} => Hash<String,String> # * {Types::GetWorkflowResponse#metadata #metadata} => Hash<String,String> # * {Types::GetWorkflowResponse#accelerators #accelerators} => String # # @example Request syntax with placeholder values # # resp = client.get_workflow({ # id: "WorkflowId", # required # type: "PRIVATE", # accepts PRIVATE, READY2RUN # export: ["DEFINITION"], # accepts DEFINITION # workflow_owner_id: "WorkflowOwnerId", # }) # # @example Response structure # # resp.arn #=> String # resp.id #=> String # resp.status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE" # resp.type #=> String, one of "PRIVATE", "READY2RUN" # resp.name #=> String # resp.description #=> String # resp.engine #=> String, one of "WDL", "NEXTFLOW", "CWL" # resp.definition #=> String # resp.main #=> String # resp.digest #=> String # resp.parameter_template #=> Hash # resp.parameter_template["WorkflowParameterName"].description #=> String # resp.parameter_template["WorkflowParameterName"].optional #=> Boolean # resp.storage_capacity #=> Integer # resp.creation_time #=> Time # resp.status_message #=> String # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # resp.metadata #=> Hash # resp.metadata["WorkflowMetadataKey"] #=> String # resp.accelerators #=> String, one of "GPU" # # # The following waiters are defined for this operation (see {Client#wait_until} for detailed usage): # # * workflow_active # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/GetWorkflow AWS API Documentation # # @overload get_workflow(params = {}) # @param [Hash] params ({}) def get_workflow(params = {}, options = {}) req = build_request(:get_workflow, params) req.send_request(options) end # Retrieves a list of annotation import jobs. # # @option params [Integer] :max_results # The maximum number of jobs to return in one page of results. # # @option params [Array] :ids # IDs of annotation import jobs to retrieve. # # @option params [String] :next_token # Specifies the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ListAnnotationImportJobsFilter] :filter # A filter to apply to the list. # # @return [Types::ListAnnotationImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListAnnotationImportJobsResponse#annotation_import_jobs #annotation_import_jobs} => Array<Types::AnnotationImportJobItem> # * {Types::ListAnnotationImportJobsResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_annotation_import_jobs({ # max_results: 1, # ids: ["ResourceIdentifier"], # next_token: "ListAnnotationImportJobsRequestNextTokenString", # filter: { # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES # store_name: "String", # }, # }) # # @example Response structure # # resp.annotation_import_jobs #=> Array # resp.annotation_import_jobs[0].id #=> String # resp.annotation_import_jobs[0].destination_name #=> String # resp.annotation_import_jobs[0].version_name #=> String # resp.annotation_import_jobs[0].role_arn #=> String # resp.annotation_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES" # resp.annotation_import_jobs[0].creation_time #=> Time # resp.annotation_import_jobs[0].update_time #=> Time # resp.annotation_import_jobs[0].completion_time #=> Time # resp.annotation_import_jobs[0].run_left_normalization #=> Boolean # resp.annotation_import_jobs[0].annotation_fields #=> Hash # resp.annotation_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationImportJobs AWS API Documentation # # @overload list_annotation_import_jobs(params = {}) # @param [Hash] params ({}) def list_annotation_import_jobs(params = {}, options = {}) req = build_request(:list_annotation_import_jobs, params) req.send_request(options) end # Lists the versions of an annotation store. # # @option params [required, String] :name # The name of an annotation store. # # @option params [Integer] :max_results # The maximum number of annotation store versions to return in one page # of results. # # @option params [String] :next_token # Specifies the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ListAnnotationStoreVersionsFilter] :filter # A filter to apply to the list of annotation store versions. # # @return [Types::ListAnnotationStoreVersionsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListAnnotationStoreVersionsResponse#annotation_store_versions #annotation_store_versions} => Array<Types::AnnotationStoreVersionItem> # * {Types::ListAnnotationStoreVersionsResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_annotation_store_versions({ # name: "String", # required # max_results: 1, # next_token: "ListAnnotationStoreVersionsRequestNextTokenString", # filter: { # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED # }, # }) # # @example Response structure # # resp.annotation_store_versions #=> Array # resp.annotation_store_versions[0].store_id #=> String # resp.annotation_store_versions[0].id #=> String # resp.annotation_store_versions[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.annotation_store_versions[0].version_arn #=> String # resp.annotation_store_versions[0].name #=> String # resp.annotation_store_versions[0].version_name #=> String # resp.annotation_store_versions[0].description #=> String # resp.annotation_store_versions[0].creation_time #=> Time # resp.annotation_store_versions[0].update_time #=> Time # resp.annotation_store_versions[0].status_message #=> String # resp.annotation_store_versions[0].version_size_bytes #=> Integer # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationStoreVersions AWS API Documentation # # @overload list_annotation_store_versions(params = {}) # @param [Hash] params ({}) def list_annotation_store_versions(params = {}, options = {}) req = build_request(:list_annotation_store_versions, params) req.send_request(options) end # Retrieves a list of annotation stores. # # @option params [Array] :ids # IDs of stores to list. # # @option params [Integer] :max_results # The maximum number of stores to return in one page of results. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ListAnnotationStoresFilter] :filter # A filter to apply to the list. # # @return [Types::ListAnnotationStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListAnnotationStoresResponse#annotation_stores #annotation_stores} => Array<Types::AnnotationStoreItem> # * {Types::ListAnnotationStoresResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_annotation_stores({ # ids: ["ResourceIdentifier"], # max_results: 1, # next_token: "ListAnnotationStoresRequestNextTokenString", # filter: { # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED # }, # }) # # @example Response structure # # resp.annotation_stores #=> Array # resp.annotation_stores[0].id #=> String # resp.annotation_stores[0].reference.reference_arn #=> String # resp.annotation_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.annotation_stores[0].store_arn #=> String # resp.annotation_stores[0].name #=> String # resp.annotation_stores[0].store_format #=> String, one of "GFF", "TSV", "VCF" # resp.annotation_stores[0].description #=> String # resp.annotation_stores[0].sse_config.type #=> String, one of "KMS" # resp.annotation_stores[0].sse_config.key_arn #=> String # resp.annotation_stores[0].creation_time #=> Time # resp.annotation_stores[0].update_time #=> Time # resp.annotation_stores[0].status_message #=> String # resp.annotation_stores[0].store_size_bytes #=> Integer # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListAnnotationStores AWS API Documentation # # @overload list_annotation_stores(params = {}) # @param [Hash] params ({}) def list_annotation_stores(params = {}, options = {}) req = build_request(:list_annotation_stores, params) req.send_request(options) end # Lists multipart read set uploads and for in progress uploads. Once the # upload is completed, a read set is created and the upload will no # longer be returned in the response. # # @option params [required, String] :sequence_store_id # The Sequence Store ID used for the multipart uploads. # # @option params [Integer] :max_results # The maximum number of multipart uploads returned in a page. # # @option params [String] :next_token # Next token returned in the response of a previous # ListMultipartReadSetUploads call. Used to get the next page of # results. # # @return [Types::ListMultipartReadSetUploadsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListMultipartReadSetUploadsResponse#next_token #next_token} => String # * {Types::ListMultipartReadSetUploadsResponse#uploads #uploads} => Array<Types::MultipartReadSetUploadListItem> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_multipart_read_set_uploads({ # sequence_store_id: "SequenceStoreId", # required # max_results: 1, # next_token: "NextToken", # }) # # @example Response structure # # resp.next_token #=> String # resp.uploads #=> Array # resp.uploads[0].sequence_store_id #=> String # resp.uploads[0].upload_id #=> String # resp.uploads[0].source_file_type #=> String, one of "FASTQ", "BAM", "CRAM", "UBAM" # resp.uploads[0].subject_id #=> String # resp.uploads[0].sample_id #=> String # resp.uploads[0].generated_from #=> String # resp.uploads[0].reference_arn #=> String # resp.uploads[0].name #=> String # resp.uploads[0].description #=> String # resp.uploads[0].tags #=> Hash # resp.uploads[0].tags["TagKey"] #=> String # resp.uploads[0].creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListMultipartReadSetUploads AWS API Documentation # # @overload list_multipart_read_set_uploads(params = {}) # @param [Hash] params ({}) def list_multipart_read_set_uploads(params = {}, options = {}) req = build_request(:list_multipart_read_set_uploads, params) req.send_request(options) end # Retrieves a list of read set activation jobs. # # @option params [required, String] :sequence_store_id # The read set's sequence store ID. # # @option params [Integer] :max_results # The maximum number of read set activation jobs to return in one page # of results. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ActivateReadSetFilter] :filter # A filter to apply to the list. # # @return [Types::ListReadSetActivationJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListReadSetActivationJobsResponse#next_token #next_token} => String # * {Types::ListReadSetActivationJobsResponse#activation_jobs #activation_jobs} => Array<Types::ActivateReadSetJobItem> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_read_set_activation_jobs({ # sequence_store_id: "SequenceStoreId", # required # max_results: 1, # next_token: "NextToken", # filter: { # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES # created_after: Time.now, # created_before: Time.now, # }, # }) # # @example Response structure # # resp.next_token #=> String # resp.activation_jobs #=> Array # resp.activation_jobs[0].id #=> String # resp.activation_jobs[0].sequence_store_id #=> String # resp.activation_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.activation_jobs[0].creation_time #=> Time # resp.activation_jobs[0].completion_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetActivationJobs AWS API Documentation # # @overload list_read_set_activation_jobs(params = {}) # @param [Hash] params ({}) def list_read_set_activation_jobs(params = {}, options = {}) req = build_request(:list_read_set_activation_jobs, params) req.send_request(options) end # Retrieves a list of read set export jobs. # # @option params [required, String] :sequence_store_id # The jobs' sequence store ID. # # @option params [Integer] :max_results # The maximum number of jobs to return in one page of results. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ExportReadSetFilter] :filter # A filter to apply to the list. # # @return [Types::ListReadSetExportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListReadSetExportJobsResponse#next_token #next_token} => String # * {Types::ListReadSetExportJobsResponse#export_jobs #export_jobs} => Array<Types::ExportReadSetJobDetail> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_read_set_export_jobs({ # sequence_store_id: "SequenceStoreId", # required # max_results: 1, # next_token: "NextToken", # filter: { # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES # created_after: Time.now, # created_before: Time.now, # }, # }) # # @example Response structure # # resp.next_token #=> String # resp.export_jobs #=> Array # resp.export_jobs[0].id #=> String # resp.export_jobs[0].sequence_store_id #=> String # resp.export_jobs[0].destination #=> String # resp.export_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.export_jobs[0].creation_time #=> Time # resp.export_jobs[0].completion_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetExportJobs AWS API Documentation # # @overload list_read_set_export_jobs(params = {}) # @param [Hash] params ({}) def list_read_set_export_jobs(params = {}, options = {}) req = build_request(:list_read_set_export_jobs, params) req.send_request(options) end # Retrieves a list of read set import jobs. # # @option params [Integer] :max_results # The maximum number of jobs to return in one page of results. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [required, String] :sequence_store_id # The jobs' sequence store ID. # # @option params [Types::ImportReadSetFilter] :filter # A filter to apply to the list. # # @return [Types::ListReadSetImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListReadSetImportJobsResponse#next_token #next_token} => String # * {Types::ListReadSetImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReadSetJobItem> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_read_set_import_jobs({ # max_results: 1, # next_token: "NextToken", # sequence_store_id: "SequenceStoreId", # required # filter: { # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES # created_after: Time.now, # created_before: Time.now, # }, # }) # # @example Response structure # # resp.next_token #=> String # resp.import_jobs #=> Array # resp.import_jobs[0].id #=> String # resp.import_jobs[0].sequence_store_id #=> String # resp.import_jobs[0].role_arn #=> String # resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.import_jobs[0].creation_time #=> Time # resp.import_jobs[0].completion_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetImportJobs AWS API Documentation # # @overload list_read_set_import_jobs(params = {}) # @param [Hash] params ({}) def list_read_set_import_jobs(params = {}, options = {}) req = build_request(:list_read_set_import_jobs, params) req.send_request(options) end # This operation will list all parts in a requested multipart upload for # a sequence store. # # @option params [required, String] :sequence_store_id # The Sequence Store ID used for the multipart uploads. # # @option params [required, String] :upload_id # The ID for the initiated multipart upload. # # @option params [required, String] :part_source # The source file for the upload part. # # @option params [Integer] :max_results # The maximum number of read set upload parts returned in a page. # # @option params [String] :next_token # Next token returned in the response of a previous # ListReadSetUploadPartsRequest call. Used to get the next page of # results. # # @option params [Types::ReadSetUploadPartListFilter] :filter # Attributes used to filter for a specific subset of read set part # uploads. # # @return [Types::ListReadSetUploadPartsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListReadSetUploadPartsResponse#next_token #next_token} => String # * {Types::ListReadSetUploadPartsResponse#parts #parts} => Array<Types::ReadSetUploadPartListItem> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_read_set_upload_parts({ # sequence_store_id: "SequenceStoreId", # required # upload_id: "UploadId", # required # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2 # max_results: 1, # next_token: "NextToken", # filter: { # created_after: Time.now, # created_before: Time.now, # }, # }) # # @example Response structure # # resp.next_token #=> String # resp.parts #=> Array # resp.parts[0].part_number #=> Integer # resp.parts[0].part_size #=> Integer # resp.parts[0].part_source #=> String, one of "SOURCE1", "SOURCE2" # resp.parts[0].checksum #=> String # resp.parts[0].creation_time #=> Time # resp.parts[0].last_updated_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSetUploadParts AWS API Documentation # # @overload list_read_set_upload_parts(params = {}) # @param [Hash] params ({}) def list_read_set_upload_parts(params = {}, options = {}) req = build_request(:list_read_set_upload_parts, params) req.send_request(options) end # Retrieves a list of read sets. # # @option params [required, String] :sequence_store_id # The jobs' sequence store ID. # # @option params [Integer] :max_results # The maximum number of read sets to return in one page of results. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ReadSetFilter] :filter # A filter to apply to the list. # # @return [Types::ListReadSetsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListReadSetsResponse#next_token #next_token} => String # * {Types::ListReadSetsResponse#read_sets #read_sets} => Array<Types::ReadSetListItem> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_read_sets({ # sequence_store_id: "SequenceStoreId", # required # max_results: 1, # next_token: "NextToken", # filter: { # name: "ReadSetName", # status: "ARCHIVED", # accepts ARCHIVED, ACTIVATING, ACTIVE, DELETING, DELETED, PROCESSING_UPLOAD, UPLOAD_FAILED # reference_arn: "ReferenceArnFilter", # created_after: Time.now, # created_before: Time.now, # sample_id: "SampleId", # subject_id: "SubjectId", # generated_from: "GeneratedFrom", # creation_type: "IMPORT", # accepts IMPORT, UPLOAD # }, # }) # # @example Response structure # # resp.next_token #=> String # resp.read_sets #=> Array # resp.read_sets[0].id #=> String # resp.read_sets[0].arn #=> String # resp.read_sets[0].sequence_store_id #=> String # resp.read_sets[0].subject_id #=> String # resp.read_sets[0].sample_id #=> String # resp.read_sets[0].status #=> String, one of "ARCHIVED", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "PROCESSING_UPLOAD", "UPLOAD_FAILED" # resp.read_sets[0].name #=> String # resp.read_sets[0].description #=> String # resp.read_sets[0].reference_arn #=> String # resp.read_sets[0].file_type #=> String, one of "FASTQ", "BAM", "CRAM", "UBAM" # resp.read_sets[0].sequence_information.total_read_count #=> Integer # resp.read_sets[0].sequence_information.total_base_count #=> Integer # resp.read_sets[0].sequence_information.generated_from #=> String # resp.read_sets[0].sequence_information.alignment #=> String # resp.read_sets[0].creation_time #=> Time # resp.read_sets[0].status_message #=> String # resp.read_sets[0].creation_type #=> String, one of "IMPORT", "UPLOAD" # resp.read_sets[0].etag.algorithm #=> String, one of "FASTQ_MD5up", "BAM_MD5up", "CRAM_MD5up", "FASTQ_SHA256up", "BAM_SHA256up", "CRAM_SHA256up", "FASTQ_SHA512up", "BAM_SHA512up", "CRAM_SHA512up" # resp.read_sets[0].etag.source1 #=> String # resp.read_sets[0].etag.source2 #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReadSets AWS API Documentation # # @overload list_read_sets(params = {}) # @param [Hash] params ({}) def list_read_sets(params = {}, options = {}) req = build_request(:list_read_sets, params) req.send_request(options) end # Retrieves a list of reference import jobs. # # @option params [Integer] :max_results # The maximum number of jobs to return in one page of results. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [required, String] :reference_store_id # The job's reference store ID. # # @option params [Types::ImportReferenceFilter] :filter # A filter to apply to the list. # # @return [Types::ListReferenceImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListReferenceImportJobsResponse#next_token #next_token} => String # * {Types::ListReferenceImportJobsResponse#import_jobs #import_jobs} => Array<Types::ImportReferenceJobItem> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_reference_import_jobs({ # max_results: 1, # next_token: "NextToken", # reference_store_id: "ReferenceStoreId", # required # filter: { # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLING, CANCELLED, FAILED, COMPLETED, COMPLETED_WITH_FAILURES # created_after: Time.now, # created_before: Time.now, # }, # }) # # @example Response structure # # resp.next_token #=> String # resp.import_jobs #=> Array # resp.import_jobs[0].id #=> String # resp.import_jobs[0].reference_store_id #=> String # resp.import_jobs[0].role_arn #=> String # resp.import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.import_jobs[0].creation_time #=> Time # resp.import_jobs[0].completion_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceImportJobs AWS API Documentation # # @overload list_reference_import_jobs(params = {}) # @param [Hash] params ({}) def list_reference_import_jobs(params = {}, options = {}) req = build_request(:list_reference_import_jobs, params) req.send_request(options) end # Retrieves a list of reference stores. # # @option params [Integer] :max_results # The maximum number of stores to return in one page of results. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ReferenceStoreFilter] :filter # A filter to apply to the list. # # @return [Types::ListReferenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListReferenceStoresResponse#next_token #next_token} => String # * {Types::ListReferenceStoresResponse#reference_stores #reference_stores} => Array<Types::ReferenceStoreDetail> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_reference_stores({ # max_results: 1, # next_token: "NextToken", # filter: { # name: "ReferenceStoreName", # created_after: Time.now, # created_before: Time.now, # }, # }) # # @example Response structure # # resp.next_token #=> String # resp.reference_stores #=> Array # resp.reference_stores[0].arn #=> String # resp.reference_stores[0].id #=> String # resp.reference_stores[0].name #=> String # resp.reference_stores[0].description #=> String # resp.reference_stores[0].sse_config.type #=> String, one of "KMS" # resp.reference_stores[0].sse_config.key_arn #=> String # resp.reference_stores[0].creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferenceStores AWS API Documentation # # @overload list_reference_stores(params = {}) # @param [Hash] params ({}) def list_reference_stores(params = {}, options = {}) req = build_request(:list_reference_stores, params) req.send_request(options) end # Retrieves a list of references. # # @option params [required, String] :reference_store_id # The references' reference store ID. # # @option params [Integer] :max_results # The maximum number of references to return in one page of results. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ReferenceFilter] :filter # A filter to apply to the list. # # @return [Types::ListReferencesResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListReferencesResponse#next_token #next_token} => String # * {Types::ListReferencesResponse#references #references} => Array<Types::ReferenceListItem> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_references({ # reference_store_id: "ReferenceStoreId", # required # max_results: 1, # next_token: "NextToken", # filter: { # name: "ReferenceName", # md5: "Md5", # created_after: Time.now, # created_before: Time.now, # }, # }) # # @example Response structure # # resp.next_token #=> String # resp.references #=> Array # resp.references[0].id #=> String # resp.references[0].arn #=> String # resp.references[0].reference_store_id #=> String # resp.references[0].md5 #=> String # resp.references[0].status #=> String, one of "ACTIVE", "DELETING", "DELETED" # resp.references[0].name #=> String # resp.references[0].description #=> String # resp.references[0].creation_time #=> Time # resp.references[0].update_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListReferences AWS API Documentation # # @overload list_references(params = {}) # @param [Hash] params ({}) def list_references(params = {}, options = {}) req = build_request(:list_references, params) req.send_request(options) end # Retrieves a list of run groups. # # @option params [String] :name # The run groups' name. # # @option params [String] :starting_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Integer] :max_results # The maximum number of run groups to return in one page of results. # # @return [Types::ListRunGroupsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListRunGroupsResponse#items #items} => Array<Types::RunGroupListItem> # * {Types::ListRunGroupsResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_run_groups({ # name: "RunGroupName", # starting_token: "RunGroupListToken", # max_results: 1, # }) # # @example Response structure # # resp.items #=> Array # resp.items[0].arn #=> String # resp.items[0].id #=> String # resp.items[0].name #=> String # resp.items[0].max_cpus #=> Integer # resp.items[0].max_runs #=> Integer # resp.items[0].max_duration #=> Integer # resp.items[0].creation_time #=> Time # resp.items[0].max_gpus #=> Integer # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunGroups AWS API Documentation # # @overload list_run_groups(params = {}) # @param [Hash] params ({}) def list_run_groups(params = {}, options = {}) req = build_request(:list_run_groups, params) req.send_request(options) end # Retrieves a list of tasks for a run. # # @option params [required, String] :id # The run's ID. # # @option params [String] :status # Filter the list by status. # # @option params [String] :starting_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Integer] :max_results # The maximum number of run tasks to return in one page of results. # # @return [Types::ListRunTasksResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListRunTasksResponse#items #items} => Array<Types::TaskListItem> # * {Types::ListRunTasksResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_run_tasks({ # id: "RunId", # required # status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, CANCELLED, FAILED # starting_token: "TaskListToken", # max_results: 1, # }) # # @example Response structure # # resp.items #=> Array # resp.items[0].task_id #=> String # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "CANCELLED", "FAILED" # resp.items[0].name #=> String # resp.items[0].cpus #=> Integer # resp.items[0].memory #=> Integer # resp.items[0].creation_time #=> Time # resp.items[0].start_time #=> Time # resp.items[0].stop_time #=> Time # resp.items[0].gpus #=> Integer # resp.items[0].instance_type #=> String # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRunTasks AWS API Documentation # # @overload list_run_tasks(params = {}) # @param [Hash] params ({}) def list_run_tasks(params = {}, options = {}) req = build_request(:list_run_tasks, params) req.send_request(options) end # Retrieves a list of runs. # # @option params [String] :name # Filter the list by run name. # # @option params [String] :run_group_id # Filter the list by run group ID. # # @option params [String] :starting_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Integer] :max_results # The maximum number of runs to return in one page of results. # # @option params [String] :status # The status of a run. # # @return [Types::ListRunsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListRunsResponse#items #items} => Array<Types::RunListItem> # * {Types::ListRunsResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_runs({ # name: "RunName", # run_group_id: "RunGroupId", # starting_token: "RunListToken", # max_results: 1, # status: "PENDING", # accepts PENDING, STARTING, RUNNING, STOPPING, COMPLETED, DELETED, CANCELLED, FAILED # }) # # @example Response structure # # resp.items #=> Array # resp.items[0].arn #=> String # resp.items[0].id #=> String # resp.items[0].status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED" # resp.items[0].workflow_id #=> String # resp.items[0].name #=> String # resp.items[0].priority #=> Integer # resp.items[0].storage_capacity #=> Integer # resp.items[0].creation_time #=> Time # resp.items[0].start_time #=> Time # resp.items[0].stop_time #=> Time # resp.items[0].storage_type #=> String, one of "STATIC", "DYNAMIC" # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListRuns AWS API Documentation # # @overload list_runs(params = {}) # @param [Hash] params ({}) def list_runs(params = {}, options = {}) req = build_request(:list_runs, params) req.send_request(options) end # Retrieves a list of sequence stores. # # @option params [Integer] :max_results # The maximum number of stores to return in one page of results. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::SequenceStoreFilter] :filter # A filter to apply to the list. # # @return [Types::ListSequenceStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListSequenceStoresResponse#next_token #next_token} => String # * {Types::ListSequenceStoresResponse#sequence_stores #sequence_stores} => Array<Types::SequenceStoreDetail> # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_sequence_stores({ # max_results: 1, # next_token: "NextToken", # filter: { # name: "SequenceStoreName", # created_after: Time.now, # created_before: Time.now, # }, # }) # # @example Response structure # # resp.next_token #=> String # resp.sequence_stores #=> Array # resp.sequence_stores[0].arn #=> String # resp.sequence_stores[0].id #=> String # resp.sequence_stores[0].name #=> String # resp.sequence_stores[0].description #=> String # resp.sequence_stores[0].sse_config.type #=> String, one of "KMS" # resp.sequence_stores[0].sse_config.key_arn #=> String # resp.sequence_stores[0].creation_time #=> Time # resp.sequence_stores[0].fallback_location #=> String # resp.sequence_stores[0].e_tag_algorithm_family #=> String, one of "MD5up", "SHA256up", "SHA512up" # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListSequenceStores AWS API Documentation # # @overload list_sequence_stores(params = {}) # @param [Hash] params ({}) def list_sequence_stores(params = {}, options = {}) req = build_request(:list_sequence_stores, params) req.send_request(options) end # Retrieves the resource shares associated with an account. Use the # filter parameter to retrieve a specific subset of the shares. # # @option params [required, String] :resource_owner # The account that owns the resource shares. # # @option params [Types::Filter] :filter # Attributes that you use to filter for a specific subset of resource # shares. # # @option params [String] :next_token # Next token returned in the response of a previous # ListReadSetUploadPartsRequest call. Used to get the next page of # results. # # @option params [Integer] :max_results # The maximum number of shares to return in one page of results. # # @return [Types::ListSharesResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListSharesResponse#shares #shares} => Array<Types::ShareDetails> # * {Types::ListSharesResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_shares({ # resource_owner: "SELF", # required, accepts SELF, OTHER # filter: { # resource_arns: ["String"], # status: ["PENDING"], # accepts PENDING, ACTIVATING, ACTIVE, DELETING, DELETED, FAILED # type: ["VARIANT_STORE"], # accepts VARIANT_STORE, ANNOTATION_STORE, WORKFLOW # }, # next_token: "String", # max_results: 1, # }) # # @example Response structure # # resp.shares #=> Array # resp.shares[0].share_id #=> String # resp.shares[0].resource_arn #=> String # resp.shares[0].resource_id #=> String # resp.shares[0].principal_subscriber #=> String # resp.shares[0].owner_id #=> String # resp.shares[0].status #=> String, one of "PENDING", "ACTIVATING", "ACTIVE", "DELETING", "DELETED", "FAILED" # resp.shares[0].status_message #=> String # resp.shares[0].share_name #=> String # resp.shares[0].creation_time #=> Time # resp.shares[0].update_time #=> Time # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListShares AWS API Documentation # # @overload list_shares(params = {}) # @param [Hash] params ({}) def list_shares(params = {}, options = {}) req = build_request(:list_shares, params) req.send_request(options) end # Retrieves a list of tags for a resource. # # @option params [required, String] :resource_arn # The resource's ARN. # # @return [Types::ListTagsForResourceResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListTagsForResourceResponse#tags #tags} => Hash<String,String> # # @example Request syntax with placeholder values # # resp = client.list_tags_for_resource({ # resource_arn: "TagArn", # required # }) # # @example Response structure # # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListTagsForResource AWS API Documentation # # @overload list_tags_for_resource(params = {}) # @param [Hash] params ({}) def list_tags_for_resource(params = {}, options = {}) req = build_request(:list_tags_for_resource, params) req.send_request(options) end # Retrieves a list of variant import jobs. # # @option params [Integer] :max_results # The maximum number of import jobs to return in one page of results. # # @option params [Array] :ids # A list of job IDs. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ListVariantImportJobsFilter] :filter # A filter to apply to the list. # # @return [Types::ListVariantImportJobsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListVariantImportJobsResponse#variant_import_jobs #variant_import_jobs} => Array<Types::VariantImportJobItem> # * {Types::ListVariantImportJobsResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_variant_import_jobs({ # max_results: 1, # ids: ["ResourceIdentifier"], # next_token: "ListVariantImportJobsRequestNextTokenString", # filter: { # status: "SUBMITTED", # accepts SUBMITTED, IN_PROGRESS, CANCELLED, COMPLETED, FAILED, COMPLETED_WITH_FAILURES # store_name: "String", # }, # }) # # @example Response structure # # resp.variant_import_jobs #=> Array # resp.variant_import_jobs[0].id #=> String # resp.variant_import_jobs[0].destination_name #=> String # resp.variant_import_jobs[0].role_arn #=> String # resp.variant_import_jobs[0].status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLED", "COMPLETED", "FAILED", "COMPLETED_WITH_FAILURES" # resp.variant_import_jobs[0].creation_time #=> Time # resp.variant_import_jobs[0].update_time #=> Time # resp.variant_import_jobs[0].completion_time #=> Time # resp.variant_import_jobs[0].run_left_normalization #=> Boolean # resp.variant_import_jobs[0].annotation_fields #=> Hash # resp.variant_import_jobs[0].annotation_fields["AnnotationFieldMapKeyString"] #=> String # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantImportJobs AWS API Documentation # # @overload list_variant_import_jobs(params = {}) # @param [Hash] params ({}) def list_variant_import_jobs(params = {}, options = {}) req = build_request(:list_variant_import_jobs, params) req.send_request(options) end # Retrieves a list of variant stores. # # @option params [Integer] :max_results # The maximum number of stores to return in one page of results. # # @option params [Array] :ids # A list of store IDs. # # @option params [String] :next_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Types::ListVariantStoresFilter] :filter # A filter to apply to the list. # # @return [Types::ListVariantStoresResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListVariantStoresResponse#variant_stores #variant_stores} => Array<Types::VariantStoreItem> # * {Types::ListVariantStoresResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_variant_stores({ # max_results: 1, # ids: ["ResourceIdentifier"], # next_token: "ListVariantStoresRequestNextTokenString", # filter: { # status: "CREATING", # accepts CREATING, UPDATING, DELETING, ACTIVE, FAILED # }, # }) # # @example Response structure # # resp.variant_stores #=> Array # resp.variant_stores[0].id #=> String # resp.variant_stores[0].reference.reference_arn #=> String # resp.variant_stores[0].status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.variant_stores[0].store_arn #=> String # resp.variant_stores[0].name #=> String # resp.variant_stores[0].description #=> String # resp.variant_stores[0].sse_config.type #=> String, one of "KMS" # resp.variant_stores[0].sse_config.key_arn #=> String # resp.variant_stores[0].creation_time #=> Time # resp.variant_stores[0].update_time #=> Time # resp.variant_stores[0].status_message #=> String # resp.variant_stores[0].store_size_bytes #=> Integer # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListVariantStores AWS API Documentation # # @overload list_variant_stores(params = {}) # @param [Hash] params ({}) def list_variant_stores(params = {}, options = {}) req = build_request(:list_variant_stores, params) req.send_request(options) end # Retrieves a list of workflows. # # @option params [String] :type # Filter the list by workflow type. # # @option params [String] :name # Filter the list by workflow name. # # @option params [String] :starting_token # Specify the pagination token from a previous request to retrieve the # next page of results. # # @option params [Integer] :max_results # The maximum number of workflows to return in one page of results. # # @return [Types::ListWorkflowsResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::ListWorkflowsResponse#items #items} => Array<Types::WorkflowListItem> # * {Types::ListWorkflowsResponse#next_token #next_token} => String # # The returned {Seahorse::Client::Response response} is a pageable response and is Enumerable. For details on usage see {Aws::PageableResponse PageableResponse}. # # @example Request syntax with placeholder values # # resp = client.list_workflows({ # type: "PRIVATE", # accepts PRIVATE, READY2RUN # name: "WorkflowName", # starting_token: "WorkflowListToken", # max_results: 1, # }) # # @example Response structure # # resp.items #=> Array # resp.items[0].arn #=> String # resp.items[0].id #=> String # resp.items[0].name #=> String # resp.items[0].status #=> String, one of "CREATING", "ACTIVE", "UPDATING", "DELETED", "FAILED", "INACTIVE" # resp.items[0].type #=> String, one of "PRIVATE", "READY2RUN" # resp.items[0].digest #=> String # resp.items[0].creation_time #=> Time # resp.items[0].metadata #=> Hash # resp.items[0].metadata["WorkflowMetadataKey"] #=> String # resp.next_token #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/ListWorkflows AWS API Documentation # # @overload list_workflows(params = {}) # @param [Hash] params ({}) def list_workflows(params = {}, options = {}) req = build_request(:list_workflows, params) req.send_request(options) end # Starts an annotation import job. # # @option params [required, String] :destination_name # A destination annotation store for the job. # # @option params [required, String] :role_arn # A service role for the job. # # @option params [required, Array] :items # Items to import. # # @option params [String] :version_name # The name of the annotation store version. # # @option params [Types::FormatOptions] :format_options # Formatting options for the annotation file. # # @option params [Boolean] :run_left_normalization # The job's left normalization setting. # # @option params [Hash] :annotation_fields # The annotation schema generated by the parsed annotation data. # # @return [Types::StartAnnotationImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::StartAnnotationImportResponse#job_id #job_id} => String # # @example Request syntax with placeholder values # # resp = client.start_annotation_import_job({ # destination_name: "StoreName", # required # role_arn: "Arn", # required # items: [ # required # { # source: "S3Uri", # required # }, # ], # version_name: "VersionName", # format_options: { # tsv_options: { # read_options: { # sep: "Separator", # encoding: "Encoding", # quote: "Quote", # quote_all: false, # escape: "EscapeChar", # escape_quotes: false, # comment: "CommentChar", # header: false, # line_sep: "LineSep", # }, # }, # vcf_options: { # ignore_qual_field: false, # ignore_filter_field: false, # }, # }, # run_left_normalization: false, # annotation_fields: { # "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString", # }, # }) # # @example Response structure # # resp.job_id #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartAnnotationImportJob AWS API Documentation # # @overload start_annotation_import_job(params = {}) # @param [Hash] params ({}) def start_annotation_import_job(params = {}, options = {}) req = build_request(:start_annotation_import_job, params) req.send_request(options) end # Activates an archived read set. To reduce storage charges, Amazon # Omics archives unused read sets after 30 days. # # @option params [required, String] :sequence_store_id # The read set's sequence store ID. # # @option params [String] :client_token # To ensure that jobs don't run multiple times, specify a unique token # for each job. # # @option params [required, Array] :sources # The job's source files. # # @return [Types::StartReadSetActivationJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::StartReadSetActivationJobResponse#id #id} => String # * {Types::StartReadSetActivationJobResponse#sequence_store_id #sequence_store_id} => String # * {Types::StartReadSetActivationJobResponse#status #status} => String # * {Types::StartReadSetActivationJobResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.start_read_set_activation_job({ # sequence_store_id: "SequenceStoreId", # required # client_token: "ClientToken", # sources: [ # required # { # read_set_id: "ReadSetId", # required # }, # ], # }) # # @example Response structure # # resp.id #=> String # resp.sequence_store_id #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetActivationJob AWS API Documentation # # @overload start_read_set_activation_job(params = {}) # @param [Hash] params ({}) def start_read_set_activation_job(params = {}, options = {}) req = build_request(:start_read_set_activation_job, params) req.send_request(options) end # Exports a read set to Amazon S3. # # @option params [required, String] :sequence_store_id # The read set's sequence store ID. # # @option params [required, String] :destination # A location for exported files in Amazon S3. # # @option params [required, String] :role_arn # A service role for the job. # # @option params [String] :client_token # To ensure that jobs don't run multiple times, specify a unique token # for each job. # # @option params [required, Array] :sources # The job's source files. # # @return [Types::StartReadSetExportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::StartReadSetExportJobResponse#id #id} => String # * {Types::StartReadSetExportJobResponse#sequence_store_id #sequence_store_id} => String # * {Types::StartReadSetExportJobResponse#destination #destination} => String # * {Types::StartReadSetExportJobResponse#status #status} => String # * {Types::StartReadSetExportJobResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.start_read_set_export_job({ # sequence_store_id: "SequenceStoreId", # required # destination: "S3Destination", # required # role_arn: "RoleArn", # required # client_token: "ClientToken", # sources: [ # required # { # read_set_id: "ReadSetId", # required # }, # ], # }) # # @example Response structure # # resp.id #=> String # resp.sequence_store_id #=> String # resp.destination #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetExportJob AWS API Documentation # # @overload start_read_set_export_job(params = {}) # @param [Hash] params ({}) def start_read_set_export_job(params = {}, options = {}) req = build_request(:start_read_set_export_job, params) req.send_request(options) end # Starts a read set import job. # # @option params [required, String] :sequence_store_id # The read set's sequence store ID. # # @option params [required, String] :role_arn # A service role for the job. # # @option params [String] :client_token # To ensure that jobs don't run multiple times, specify a unique token # for each job. # # @option params [required, Array] :sources # The job's source files. # # @return [Types::StartReadSetImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::StartReadSetImportJobResponse#id #id} => String # * {Types::StartReadSetImportJobResponse#sequence_store_id #sequence_store_id} => String # * {Types::StartReadSetImportJobResponse#role_arn #role_arn} => String # * {Types::StartReadSetImportJobResponse#status #status} => String # * {Types::StartReadSetImportJobResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.start_read_set_import_job({ # sequence_store_id: "SequenceStoreId", # required # role_arn: "RoleArn", # required # client_token: "ClientToken", # sources: [ # required # { # source_files: { # required # source1: "S3Uri", # required # source2: "S3Uri", # }, # source_file_type: "FASTQ", # required, accepts FASTQ, BAM, CRAM, UBAM # subject_id: "SubjectId", # required # sample_id: "SampleId", # required # generated_from: "GeneratedFrom", # reference_arn: "ReferenceArn", # name: "ReadSetName", # description: "ReadSetDescription", # tags: { # "TagKey" => "TagValue", # }, # }, # ], # }) # # @example Response structure # # resp.id #=> String # resp.sequence_store_id #=> String # resp.role_arn #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReadSetImportJob AWS API Documentation # # @overload start_read_set_import_job(params = {}) # @param [Hash] params ({}) def start_read_set_import_job(params = {}, options = {}) req = build_request(:start_read_set_import_job, params) req.send_request(options) end # Starts a reference import job. # # @option params [required, String] :reference_store_id # The job's reference store ID. # # @option params [required, String] :role_arn # A service role for the job. # # @option params [String] :client_token # To ensure that jobs don't run multiple times, specify a unique token # for each job. # # @option params [required, Array] :sources # The job's source files. # # @return [Types::StartReferenceImportJobResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::StartReferenceImportJobResponse#id #id} => String # * {Types::StartReferenceImportJobResponse#reference_store_id #reference_store_id} => String # * {Types::StartReferenceImportJobResponse#role_arn #role_arn} => String # * {Types::StartReferenceImportJobResponse#status #status} => String # * {Types::StartReferenceImportJobResponse#creation_time #creation_time} => Time # # @example Request syntax with placeholder values # # resp = client.start_reference_import_job({ # reference_store_id: "ReferenceStoreId", # required # role_arn: "RoleArn", # required # client_token: "ClientToken", # sources: [ # required # { # source_file: "S3Uri", # required # name: "ReferenceName", # required # description: "ReferenceDescription", # tags: { # "TagKey" => "TagValue", # }, # }, # ], # }) # # @example Response structure # # resp.id #=> String # resp.reference_store_id #=> String # resp.role_arn #=> String # resp.status #=> String, one of "SUBMITTED", "IN_PROGRESS", "CANCELLING", "CANCELLED", "FAILED", "COMPLETED", "COMPLETED_WITH_FAILURES" # resp.creation_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartReferenceImportJob AWS API Documentation # # @overload start_reference_import_job(params = {}) # @param [Hash] params ({}) def start_reference_import_job(params = {}, options = {}) req = build_request(:start_reference_import_job, params) req.send_request(options) end # Starts a workflow run. To duplicate a run, specify the run's ID and a # role ARN. The remaining parameters are copied from the previous run. # # StartRun will not support re-run for a workflow that is shared with # you. # # The total number of runs in your account is subject to a quota per # Region. To avoid needing to delete runs manually, you can set the # retention mode to `REMOVE`. Runs with this setting are deleted # automatically when the run quoata is exceeded. # # By default, the run uses STATIC storage. For STATIC storage, set the # `storageCapacity` field. You can set the storage type to DYNAMIC. You # do not set `storageCapacity`, because HealthOmics dynamically scales # the storage up or down as required. For more information about static # and dynamic storage, see [Running workflows][1] in the *AWS # HealthOmics User Guide*. # # # # [1]: https://docs.aws.amazon.com/omics/latest/dev/Using-workflows.html # # @option params [String] :workflow_id # The run's workflow ID. # # @option params [String] :workflow_type # The run's workflow type. # # @option params [String] :run_id # The ID of a run to duplicate. # # @option params [required, String] :role_arn # A service role for the run. # # @option params [String] :name # A name for the run. # # @option params [String] :run_group_id # The run's group ID. # # @option params [Integer] :priority # A priority for the run. # # @option params [Hash,Array,String,Numeric,Boolean] :parameters # Parameters for the run. # # Document type used to carry open content # (Hash,Array,String,Numeric,Boolean). A document type value is # serialized using the same format as its surroundings and requires no # additional encoding or escaping. # # @option params [Integer] :storage_capacity # A storage capacity for the run in gibibytes. This field is not # required if the storage type is dynamic (the system ignores any value # that you enter). # # @option params [String] :output_uri # An output URI for the run. # # @option params [String] :log_level # A log level for the run. # # @option params [Hash] :tags # Tags for the run. # # @option params [required, String] :request_id # To ensure that requests don't run multiple times, specify a unique ID # for each request. # # **A suitable default value is auto-generated.** You should normally # not need to pass this option.** # # @option params [String] :retention_mode # The retention mode for the run. # # @option params [String] :storage_type # The run's storage type. By default, the run uses STATIC storage type, # which allocates a fixed amount of storage. If you set the storage type # to DYNAMIC, HealthOmics dynamically scales the storage up or down, # based on file system utilization. # # @option params [String] :workflow_owner_id # The ID of the workflow owner. # # @return [Types::StartRunResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::StartRunResponse#arn #arn} => String # * {Types::StartRunResponse#id #id} => String # * {Types::StartRunResponse#status #status} => String # * {Types::StartRunResponse#tags #tags} => Hash<String,String> # * {Types::StartRunResponse#uuid #uuid} => String # * {Types::StartRunResponse#run_output_uri #run_output_uri} => String # # @example Request syntax with placeholder values # # resp = client.start_run({ # workflow_id: "WorkflowId", # workflow_type: "PRIVATE", # accepts PRIVATE, READY2RUN # run_id: "RunId", # role_arn: "RunRoleArn", # required # name: "RunName", # run_group_id: "RunGroupId", # priority: 1, # parameters: { # }, # storage_capacity: 1, # output_uri: "RunOutputUri", # log_level: "OFF", # accepts OFF, FATAL, ERROR, ALL # tags: { # "TagKey" => "TagValue", # }, # request_id: "RunRequestId", # required # retention_mode: "RETAIN", # accepts RETAIN, REMOVE # storage_type: "STATIC", # accepts STATIC, DYNAMIC # workflow_owner_id: "WorkflowOwnerId", # }) # # @example Response structure # # resp.arn #=> String # resp.id #=> String # resp.status #=> String, one of "PENDING", "STARTING", "RUNNING", "STOPPING", "COMPLETED", "DELETED", "CANCELLED", "FAILED" # resp.tags #=> Hash # resp.tags["TagKey"] #=> String # resp.uuid #=> String # resp.run_output_uri #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartRun AWS API Documentation # # @overload start_run(params = {}) # @param [Hash] params ({}) def start_run(params = {}, options = {}) req = build_request(:start_run, params) req.send_request(options) end # Starts a variant import job. # # @option params [required, String] :destination_name # The destination variant store for the job. # # @option params [required, String] :role_arn # A service role for the job. # # @option params [required, Array] :items # Items to import. # # @option params [Boolean] :run_left_normalization # The job's left normalization setting. # # @option params [Hash] :annotation_fields # The annotation schema generated by the parsed annotation data. # # @return [Types::StartVariantImportResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::StartVariantImportResponse#job_id #job_id} => String # # @example Request syntax with placeholder values # # resp = client.start_variant_import_job({ # destination_name: "StoreName", # required # role_arn: "Arn", # required # items: [ # required # { # source: "S3Uri", # required # }, # ], # run_left_normalization: false, # annotation_fields: { # "AnnotationFieldMapKeyString" => "AnnotationFieldMapValueString", # }, # }) # # @example Response structure # # resp.job_id #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/StartVariantImportJob AWS API Documentation # # @overload start_variant_import_job(params = {}) # @param [Hash] params ({}) def start_variant_import_job(params = {}, options = {}) req = build_request(:start_variant_import_job, params) req.send_request(options) end # Tags a resource. # # @option params [required, String] :resource_arn # The resource's ARN. # # @option params [required, Hash] :tags # Tags for the resource. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.tag_resource({ # resource_arn: "TagArn", # required # tags: { # required # "TagKey" => "TagValue", # }, # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/TagResource AWS API Documentation # # @overload tag_resource(params = {}) # @param [Hash] params ({}) def tag_resource(params = {}, options = {}) req = build_request(:tag_resource, params) req.send_request(options) end # Removes tags from a resource. # # @option params [required, String] :resource_arn # The resource's ARN. # # @option params [required, Array] :tag_keys # Keys of tags to remove. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.untag_resource({ # resource_arn: "TagArn", # required # tag_keys: ["TagKey"], # required # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UntagResource AWS API Documentation # # @overload untag_resource(params = {}) # @param [Hash] params ({}) def untag_resource(params = {}, options = {}) req = build_request(:untag_resource, params) req.send_request(options) end # Updates an annotation store. # # @option params [required, String] :name # A name for the store. # # @option params [String] :description # A description for the store. # # @return [Types::UpdateAnnotationStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::UpdateAnnotationStoreResponse#id #id} => String # * {Types::UpdateAnnotationStoreResponse#reference #reference} => Types::ReferenceItem # * {Types::UpdateAnnotationStoreResponse#status #status} => String # * {Types::UpdateAnnotationStoreResponse#name #name} => String # * {Types::UpdateAnnotationStoreResponse#description #description} => String # * {Types::UpdateAnnotationStoreResponse#creation_time #creation_time} => Time # * {Types::UpdateAnnotationStoreResponse#update_time #update_time} => Time # * {Types::UpdateAnnotationStoreResponse#store_options #store_options} => Types::StoreOptions # * {Types::UpdateAnnotationStoreResponse#store_format #store_format} => String # # @example Request syntax with placeholder values # # resp = client.update_annotation_store({ # name: "String", # required # description: "Description", # }) # # @example Response structure # # resp.id #=> String # resp.reference.reference_arn #=> String # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.name #=> String # resp.description #=> String # resp.creation_time #=> Time # resp.update_time #=> Time # resp.store_options.tsv_store_options.annotation_type #=> String, one of "GENERIC", "CHR_POS", "CHR_POS_REF_ALT", "CHR_START_END_ONE_BASE", "CHR_START_END_REF_ALT_ONE_BASE", "CHR_START_END_ZERO_BASE", "CHR_START_END_REF_ALT_ZERO_BASE" # resp.store_options.tsv_store_options.format_to_header #=> Hash # resp.store_options.tsv_store_options.format_to_header["FormatToHeaderKey"] #=> String # resp.store_options.tsv_store_options.schema #=> Array # resp.store_options.tsv_store_options.schema[0] #=> Hash # resp.store_options.tsv_store_options.schema[0]["SchemaItemKeyString"] #=> String, one of "LONG", "INT", "STRING", "FLOAT", "DOUBLE", "BOOLEAN" # resp.store_format #=> String, one of "GFF", "TSV", "VCF" # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateAnnotationStore AWS API Documentation # # @overload update_annotation_store(params = {}) # @param [Hash] params ({}) def update_annotation_store(params = {}, options = {}) req = build_request(:update_annotation_store, params) req.send_request(options) end # Updates the description of an annotation store version. # # @option params [required, String] :name # The name of an annotation store. # # @option params [required, String] :version_name # The name of an annotation store version. # # @option params [String] :description # The description of an annotation store. # # @return [Types::UpdateAnnotationStoreVersionResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::UpdateAnnotationStoreVersionResponse#store_id #store_id} => String # * {Types::UpdateAnnotationStoreVersionResponse#id #id} => String # * {Types::UpdateAnnotationStoreVersionResponse#status #status} => String # * {Types::UpdateAnnotationStoreVersionResponse#name #name} => String # * {Types::UpdateAnnotationStoreVersionResponse#version_name #version_name} => String # * {Types::UpdateAnnotationStoreVersionResponse#description #description} => String # * {Types::UpdateAnnotationStoreVersionResponse#creation_time #creation_time} => Time # * {Types::UpdateAnnotationStoreVersionResponse#update_time #update_time} => Time # # @example Request syntax with placeholder values # # resp = client.update_annotation_store_version({ # name: "String", # required # version_name: "String", # required # description: "Description", # }) # # @example Response structure # # resp.store_id #=> String # resp.id #=> String # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.name #=> String # resp.version_name #=> String # resp.description #=> String # resp.creation_time #=> Time # resp.update_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateAnnotationStoreVersion AWS API Documentation # # @overload update_annotation_store_version(params = {}) # @param [Hash] params ({}) def update_annotation_store_version(params = {}, options = {}) req = build_request(:update_annotation_store_version, params) req.send_request(options) end # Updates a run group. # # @option params [required, String] :id # The group's ID. # # @option params [String] :name # A name for the group. # # @option params [Integer] :max_cpus # The maximum number of CPUs to use. # # @option params [Integer] :max_runs # The maximum number of concurrent runs for the group. # # @option params [Integer] :max_duration # A maximum run time for the group in minutes. # # @option params [Integer] :max_gpus # The maximum GPUs that can be used by a run group. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.update_run_group({ # id: "RunGroupId", # required # name: "RunGroupName", # max_cpus: 1, # max_runs: 1, # max_duration: 1, # max_gpus: 1, # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateRunGroup AWS API Documentation # # @overload update_run_group(params = {}) # @param [Hash] params ({}) def update_run_group(params = {}, options = {}) req = build_request(:update_run_group, params) req.send_request(options) end # Updates a variant store. # # @option params [required, String] :name # A name for the store. # # @option params [String] :description # A description for the store. # # @return [Types::UpdateVariantStoreResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::UpdateVariantStoreResponse#id #id} => String # * {Types::UpdateVariantStoreResponse#reference #reference} => Types::ReferenceItem # * {Types::UpdateVariantStoreResponse#status #status} => String # * {Types::UpdateVariantStoreResponse#name #name} => String # * {Types::UpdateVariantStoreResponse#description #description} => String # * {Types::UpdateVariantStoreResponse#creation_time #creation_time} => Time # * {Types::UpdateVariantStoreResponse#update_time #update_time} => Time # # @example Request syntax with placeholder values # # resp = client.update_variant_store({ # name: "String", # required # description: "Description", # }) # # @example Response structure # # resp.id #=> String # resp.reference.reference_arn #=> String # resp.status #=> String, one of "CREATING", "UPDATING", "DELETING", "ACTIVE", "FAILED" # resp.name #=> String # resp.description #=> String # resp.creation_time #=> Time # resp.update_time #=> Time # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateVariantStore AWS API Documentation # # @overload update_variant_store(params = {}) # @param [Hash] params ({}) def update_variant_store(params = {}, options = {}) req = build_request(:update_variant_store, params) req.send_request(options) end # Updates a workflow. # # @option params [required, String] :id # The workflow's ID. # # @option params [String] :name # A name for the workflow. # # @option params [String] :description # A description for the workflow. # # @return [Struct] Returns an empty {Seahorse::Client::Response response}. # # @example Request syntax with placeholder values # # resp = client.update_workflow({ # id: "WorkflowId", # required # name: "WorkflowName", # description: "WorkflowDescription", # }) # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UpdateWorkflow AWS API Documentation # # @overload update_workflow(params = {}) # @param [Hash] params ({}) def update_workflow(params = {}, options = {}) req = build_request(:update_workflow, params) req.send_request(options) end # This operation uploads a specific part of a read set. If you upload a # new part using a previously used part number, the previously uploaded # part will be overwritten. # # @option params [required, String] :sequence_store_id # The Sequence Store ID used for the multipart upload. # # @option params [required, String] :upload_id # The ID for the initiated multipart upload. # # @option params [required, String] :part_source # The source file for an upload part. # # @option params [required, Integer] :part_number # The number of the part being uploaded. # # @option params [required, String, IO] :payload # The read set data to upload for a part. # # @return [Types::UploadReadSetPartResponse] Returns a {Seahorse::Client::Response response} object which responds to the following methods: # # * {Types::UploadReadSetPartResponse#checksum #checksum} => String # # @example Request syntax with placeholder values # # resp = client.upload_read_set_part({ # sequence_store_id: "SequenceStoreId", # required # upload_id: "UploadId", # required # part_source: "SOURCE1", # required, accepts SOURCE1, SOURCE2 # part_number: 1, # required # payload: "data", # required # }) # # @example Response structure # # resp.checksum #=> String # # @see http://docs.aws.amazon.com/goto/WebAPI/omics-2022-11-28/UploadReadSetPart AWS API Documentation # # @overload upload_read_set_part(params = {}) # @param [Hash] params ({}) def upload_read_set_part(params = {}, options = {}) req = build_request(:upload_read_set_part, params) req.send_request(options) end # @!endgroup # @param params ({}) # @api private def build_request(operation_name, params = {}) handlers = @handlers.for(operation_name) context = Seahorse::Client::RequestContext.new( operation_name: operation_name, operation: config.api.operation(operation_name), client: self, params: params, config: config) context[:gem_name] = 'aws-sdk-omics' context[:gem_version] = '1.26.0' Seahorse::Client::Request.new(handlers, context) end # Polls an API operation until a resource enters a desired state. # # ## Basic Usage # # A waiter will call an API operation until: # # * It is successful # * It enters a terminal state # * It makes the maximum number of attempts # # In between attempts, the waiter will sleep. # # # polls in a loop, sleeping between attempts # client.wait_until(waiter_name, params) # # ## Configuration # # You can configure the maximum number of polling attempts, and the # delay (in seconds) between each polling attempt. You can pass # configuration as the final arguments hash. # # # poll for ~25 seconds # client.wait_until(waiter_name, params, { # max_attempts: 5, # delay: 5, # }) # # ## Callbacks # # You can be notified before each polling attempt and before each # delay. If you throw `:success` or `:failure` from these callbacks, # it will terminate the waiter. # # started_at = Time.now # client.wait_until(waiter_name, params, { # # # disable max attempts # max_attempts: nil, # # # poll for 1 hour, instead of a number of attempts # before_wait: -> (attempts, response) do # throw :failure if Time.now - started_at > 3600 # end # }) # # ## Handling Errors # # When a waiter is unsuccessful, it will raise an error. # All of the failure errors extend from # {Aws::Waiters::Errors::WaiterFailed}. # # begin # client.wait_until(...) # rescue Aws::Waiters::Errors::WaiterFailed # # resource did not enter the desired state in time # end # # ## Valid Waiters # # The following table lists the valid waiter names, the operations they call, # and the default `:delay` and `:max_attempts` values. # # | waiter_name | params | :delay | :max_attempts | # | --------------------------------- | ------------------------------------- | -------- | ------------- | # | annotation_import_job_created | {Client#get_annotation_import_job} | 30 | 20 | # | annotation_store_created | {Client#get_annotation_store} | 30 | 20 | # | annotation_store_deleted | {Client#get_annotation_store} | 30 | 20 | # | annotation_store_version_created | {Client#get_annotation_store_version} | 30 | 20 | # | annotation_store_version_deleted | {Client#get_annotation_store_version} | 30 | 20 | # | read_set_activation_job_completed | {Client#get_read_set_activation_job} | 30 | 20 | # | read_set_export_job_completed | {Client#get_read_set_export_job} | 30 | 20 | # | read_set_import_job_completed | {Client#get_read_set_import_job} | 30 | 20 | # | reference_import_job_completed | {Client#get_reference_import_job} | 30 | 20 | # | run_completed | {Client#get_run} | 30 | 20 | # | run_running | {Client#get_run} | 30 | 20 | # | task_completed | {Client#get_run_task} | 30 | 20 | # | task_running | {Client#get_run_task} | 30 | 20 | # | variant_import_job_created | {Client#get_variant_import_job} | 30 | 20 | # | variant_store_created | {Client#get_variant_store} | 30 | 20 | # | variant_store_deleted | {Client#get_variant_store} | 30 | 20 | # | workflow_active | {Client#get_workflow} | 3 | 10 | # # @raise [Errors::FailureStateError] Raised when the waiter terminates # because the waiter has entered a state that it will not transition # out of, preventing success. # # @raise [Errors::TooManyAttemptsError] Raised when the configured # maximum number of attempts have been made, and the waiter is not # yet successful. # # @raise [Errors::UnexpectedError] Raised when an error is encounted # while polling for a resource that is not expected. # # @raise [Errors::NoSuchWaiterError] Raised when you request to wait # for an unknown state. # # @return [Boolean] Returns `true` if the waiter was successful. # @param [Symbol] waiter_name # @param [Hash] params ({}) # @param [Hash] options ({}) # @option options [Integer] :max_attempts # @option options [Integer] :delay # @option options [Proc] :before_attempt # @option options [Proc] :before_wait def wait_until(waiter_name, params = {}, options = {}) w = waiter(waiter_name, options) yield(w.waiter) if block_given? # deprecated w.wait(params) end # @api private # @deprecated def waiter_names waiters.keys end private # @param [Symbol] waiter_name # @param [Hash] options ({}) def waiter(waiter_name, options = {}) waiter_class = waiters[waiter_name] if waiter_class waiter_class.new(options.merge(client: self)) else raise Aws::Waiters::Errors::NoSuchWaiterError.new(waiter_name, waiters.keys) end end def waiters { annotation_import_job_created: Waiters::AnnotationImportJobCreated, annotation_store_created: Waiters::AnnotationStoreCreated, annotation_store_deleted: Waiters::AnnotationStoreDeleted, annotation_store_version_created: Waiters::AnnotationStoreVersionCreated, annotation_store_version_deleted: Waiters::AnnotationStoreVersionDeleted, read_set_activation_job_completed: Waiters::ReadSetActivationJobCompleted, read_set_export_job_completed: Waiters::ReadSetExportJobCompleted, read_set_import_job_completed: Waiters::ReadSetImportJobCompleted, reference_import_job_completed: Waiters::ReferenceImportJobCompleted, run_completed: Waiters::RunCompleted, run_running: Waiters::RunRunning, task_completed: Waiters::TaskCompleted, task_running: Waiters::TaskRunning, variant_import_job_created: Waiters::VariantImportJobCreated, variant_store_created: Waiters::VariantStoreCreated, variant_store_deleted: Waiters::VariantStoreDeleted, workflow_active: Waiters::WorkflowActive } end class << self # @api private attr_reader :identifier # @api private def errors_module Errors end end end end