--- 
subid: tbi000
origdir:  <%= Dir.mktmpdir('orig') %>
procdir:  <%= Dir.mktmpdir('proc') %>
statsdir: <%= @statsdir = Dir.mktmpdir('stats') %>
study_procedure: johnson.tbi.longitudinal.snod
# task_onsets: /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/snod_onsets.yml
collision: overwrite

jobs: 
- step: reconstruct
  rawdir: /Data/vtrak1/raw/test/fixtures/rpipe/johnson.tbi.longitudinal.snod/tbi000_1/raw
  scans: 
  - label: v1_snodB
    pfile: P38400.7
    type: func
    volumes_to_skip: 3
    bold_reps: 141
    task: snodB
  - label: v1_snodA
    pfile: P38912.7
    type: func
    volumes_to_skip: 3
    bold_reps: 141
    task: snodA
- step: reconstruct
  rawdir: /Data/vtrak1/raw/test/fixtures/rpipe/johnson.tbi.longitudinal.snod/tbi000_2/raw
  scans: 
  - label: v2_snodC
    pfile: P33280.7
    type: func
    volumes_to_skip: 3
    bold_reps: 141
    task: snodC
  - label: v2_snodD
    pfile: P33792.7
    type: func
    volumes_to_skip: 3
    bold_reps: 141
    task: snodD
- step: reconstruct
  rawdir: /Data/vtrak1/raw/test/fixtures/rpipe/johnson.tbi.longitudinal.snod/tbi000_3/raw
  scans: 
  - label: v3_snodB
    pfile: P61440.7
    type: func
    volumes_to_skip: 3
    bold_reps: 141
    task: snodB
  - label: v3_snodA
    pfile: P61952.7
    type: func
    volumes_to_skip: 3
    bold_reps: 141
    task: snodA
        
- step: preprocess
  method: JohnsonTbiLongitudinalSnodPreproc
  scan_labels:
    - v1_snodB
    - v1_snodA
    - v2_snodC
    - v2_snodD
    - v3_snodB
    - v3_snodA
  bold_reps:
    - 138
    - 138
    - 138
    - 138
    - 138
    - 138

- step: stats
  statsdir: <%= File.join(@statsdir, 'v1') %>
  method: JohnsonTbiLongitudinalSnodStats
  scan_labels:
    - v1_snodB
    - v1_snodA
  onsetsfiles:
  - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodB_vectors.mat
  - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodA_vectors.mat
  regressorsfiles: 
  - rp_atbi000_v1_snodB.txt
  - rp_atbi000_v1_snodA.txt
  bold_reps:
    - 138
    - 138
  conditions:
    - new
    - old

- step: stats
  statsdir: <%= File.join(@statsdir, 'v2') %>
  method: JohnsonTbiLongitudinalSnodStats
  scan_labels:
    - v2_snodC
    - v2_snodD
  onsetsfiles:
  - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodC_vectors.mat
  - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodD_vectors.mat
  regressorsfiles: 
  - rp_atbi000_v2_snodC.txt
  - rp_atbi000_v2_snodD.txt
  bold_reps:
    - 138
    - 138
  conditions:
    - new
    - old

- step: stats
  statsdir: <%= File.join(@statsdir, 'v3') %>
  method: JohnsonTbiLongitudinalSnodStats
  scan_labels:
    - v3_snodB
    - v3_snodA
  onsetsfiles:
  - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodB_vectors.mat
  - /Data/vtrak1/analyses/aparna/tbifmrilongitudinal/johnson.tbi.longitudinal.snod/progs/onsets/snodA_vectors.mat  
  regressorsfiles: 
  - rp_atbi000_v3_snodB.txt
  - rp_atbi000_v3_snodA.txt
  bold_reps:
    - 138
    - 138
  conditions:
    - new
    - old