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Versions: 47
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Contents
require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')
require 'rbbt/workflow'
Workflow.require_workflow "Genomics"
require 'rbbt/entity/gene'
require 'rbbt/sources/go'
require 'test/unit'
class TestGo < Test::Unit::TestCase
def test_go
assert_match('vacuole inheritance',GO::id2name('GO:0000011'))
assert_equal(['vacuole inheritance','alpha-glucoside transport'], GO::id2name(['GO:0000011','GO:0000017']))
end
def test_ancestors
assert GO.id2ancestors('GO:0000001').include? 'GO:0048308'
end
def test_namespace
assert_equal 'biological_process', GO.id2namespace('GO:0000001')
end
def test_ancestors
term = GOTerm.setup("GO:0005634")
end
def test_ancestry
term = GOTerm.setup("GO:0005634")
term.ancestry.include? "GO:0005634"
end
def test_ancestors_in
term = GOTerm.setup("GO:0005730")
valid = %w(GO:0005886 GO:0005634 GO:0005730 GO:0005829)
end
def test_groups
list = Gene.setup(%w(FBXW7 SP140 LHX2 KIF23),
"Associated Gene Name", Organism.default_code("Hsa"))
valid = %w(GO:0005886 GO:0005634 GO:0005730 GO:0005829 )
valid = %w(GO:0005634 GO:0005730)
assert_equal GO.group_genes(list, valid)["GO:0005730"][:name], "nucleolus"
assert_equal GO.group_genes(list, valid)["GO:0005730"][:items].sort, %w(FBXW7 SP140)
end
def test_descendants
assert GO.descendants("GO:0006281").include? "GO:0000012"
assert GO.descendants("GO:0006281").include? "GO:1990396"
end
end
Version data entries
47 entries across 47 versions & 1 rubygems