Sha256: 56510d07b44944ba5297392307c127c59e4604c4431c5bd9c69af15dab6935cd
Contents?: true
Size: 656 Bytes
Versions: 5
Compression:
Stored size: 656 Bytes
Contents
##
# FINALLY, CLUSTER!
#
module Lederhosen
class CLI
desc "cluster fasta file",
"--input=sorted.fasta --identity=0.80 --output=clusters.uc"
method_option :input, :type => :string, :default => 'sorted.fasta'
method_option :output, :type => :string, :default => 'clusters.uc'
method_option :identity, :type => :numeric, :default => 0.8
def cluster
identity = options[:identity]
output = options[:output]
input = options[:input]
cmd = [
'uclust',
"--input #{input}",
"--uc #{output}",
"--id #{identity}",
].join(' ')
exec cmd
end
end
end
Version data entries
5 entries across 5 versions & 1 rubygems